Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1055 242 8e-62 >seq1055 Length=5557 Score = 242 bits (268), Expect = 8e-62 Identities = 220/275 (80%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | || | ||||||||| |||||| || ||||||| || || Sbjct 1180 TACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCC 1239 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1240 A--TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 1297 Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTA 178 |||||||||||||||||||||||||||| ||||||| | | |||||| |||| ||| Sbjct 1298 GACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTA 1357 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || | |||||||||| ||||||||||||||||| | ||||| || ||| || Sbjct 1358 ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGT 1417 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 || ||| | |||||||||| |||||||| || Sbjct 1418 GTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGC 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062353806848