Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2513 291 1e-76 seq2403 215 9e-54 seq1514 165 1e-38 seq2014 134 2e-29 seq1464 125 1e-26 seq4318 122 1e-25 seq1862 80.6 5e-13 seq1055 78.8 2e-12 >seq2513 Length=620318 Score = 291 bits (322), Expect = 1e-76 Identities = 193/214 (90%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 104488 TCATTAGTAGGGTAAAACTAACCTGTCTCACGGCGGTCTAAACCCAGCTCACGTTCCCTA 104429 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||| |||||||||||| ||||||||| || | | |||| |||||||| Sbjct 104428 TTAGTGGGTGAATAATCCAACGCTTGGTGAATTCTGCGTCACAACGCTAGGGAGAGCCGA 104369 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 104368 AATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 104309 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||| ||| ||||||| || ||||| Sbjct 104308 CTGTGGTAACTTTCCTGACACCTCTTGCTTCAAA 104275 >seq2403 Length=884328 Score = 215 bits (238), Expect = 9e-54 Identities = 190/237 (80%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||| |||||| |||||||||||||| ||||||||||| |||||||||| ||| Sbjct 103766 GACGGTCTACACCCAGTTCACGTTCCCTATTTGTGGGTGAACAGTCCAACGCTTGGTGAA 103825 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 |||||| || | | || | ||||||||||||||||||| | | ||| ||||||||||| Sbjct 103826 TTCTGCGTCACAACGCTAAGGAGAGCCGACATCGAAGGATGAGAGAGCGACGTCGCTATG 103885 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 |||||||||| ||| |||||||||||||||||||||||||| || ||||||| || || Sbjct 103886 AACGCTTGGCCACCATGAGCCAGTTATCCCTGTGGTAACTTTTTTGACACCTCTTGCTTC 103945 Query 242 AAATTTCGAGGG-----ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||| | | | |||| | |||||||| | |||||| || ||||||| Sbjct 103946 AACCTTCAAATGTCAAAATCAAAGACTTGATAGGCCGCGCTTTCACTGTCTGTATTC 104002 >seq1514 Length=305774 Score = 165 bits (182), Expect = 1e-38 Identities = 169/218 (78%), Gaps = 11/218 (5%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 || ||||| | ||| ||||||||||||| | ||||||||||||||||||| | ||||||| Sbjct 204559 ATTAGTAGCGCAAAGCTAACCTGTCTCACGGCGGTCTAAACCCAGCTCACTTCCCCTATT 204618 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | |||||| |||||| || ||| |||| ||| | | | |||| |||||||||| Sbjct 204619 ACTGGGTG-ACAATCACACACTTGATGAATCCTGAGCCACAACGCTAGGGAGAGCCGACA 204677 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||| ||| |||||||||||||| | ||| | || ||||||||||| Sbjct 204678 TCGAAGGATCAGAAA--AACGTCGCTATGAAGGTTTG---GTCA-----CAGTTATCCCT 204727 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 || || || ||| || ||||||| | ||||||| ||| Sbjct 204728 GTAGTGACCTTTTTGACACCTCTTGTTTCAAATTCCGA 204765 >seq2014 Length=207395 Score = 134 bits (148), Expect = 2e-29 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 || ||||| || || ||| | ||||| |||| |||||||||||| || ||||||| Sbjct 205008 ATTAGTAGAGTGGAAGTAATCCATCTCAATCCGGTGTAAACCCAGCTCGGGTCCCCTATT 205067 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||| ||||||||||||| ||||||||| || | ||||||||||||||| Sbjct 205068 CTTGGGTGATCAATCCAACGCTTGGTGAATTCTGCGTCACAACACTAGGAAGAGCCGACA 205127 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 |||| ||||||| ||| | | ||||||||||||| || |||||||| Sbjct 205128 TCGATGGATCAAGAAGTGAGGCCGCTATGAACGCTCGGTCACCACAAGC 205176 >seq1464 Length=363884 Score = 125 bits (138), Expect = 1e-26 Identities = 152/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 |||||||||||||||| | || || |||||||||| | |||||| | || || |||| Sbjct 79623 AAACTAACCTGTCTCACAATGGCCTGAACCCAGCTCCTGCTCCCTACTGGTAGGCGAACG 79564 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| ||| ||| || | | ||| ||||| | |||||| |||||| Sbjct 79563 TTCCAACGCTTA-GTAATCCTGTGTCCTAACGCTAGATGGAGCCTATATCGAACGATCAA 79505 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||| |||| ||||| |||| |||||| ||| ||||||| || || || ||| | | Sbjct 79504 AAATTTACGTTGCTATAAACGATTGGCTCCCAGAAGCCAGGTAATCCCGTACTAATTATC 79445 Query 225 CTGGCACCTCTAGCCTCAAATTTCGA 250 || ||||||| || ||||| | ||| Sbjct 79444 TTGACACCTCTTGCTTCAAACTCCGA 79419 >seq4318 Length=43650 Score = 122 bits (134), Expect = 1e-25 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 140 GGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 || ||||| ||||||||||||||||||| | || ||||||| | ||||| |||||||||| Sbjct 7906 GGGAGAGCTGACATCGAAGGATCAAAAAACGACATCGCTATAAGCGCTTCGCTGCCACAA 7965 Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 | ||||||| |||||||||| ||||||| ||||||| || |||| Sbjct 7966 GTCAGTTATTCCTGTGGTAAATTTTCTGACACCTCTTGCTACAAA 8010 >seq1862 Length=422605 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||| |||| |||||||||||||||||| ||||| |||||| ||||||||| || | Sbjct 366802 TCGCTAGGAACACTTGGCTGCCACAAGCCATCTATCCATGTGGTCACTTTTCTGCGACGT 366861 Query 234 CTAGCCTCAAATTTCGA 250 || |||| ||| | ||| Sbjct 366862 CTTGCCTTAAACTCCGA 366878 >seq1055 Length=5557 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 619 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 678 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || | | ||| || ||||||||||||| | |||| | | Sbjct 679 CTTGGGACCTACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 735 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 736 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854362850688