Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1055 163 6e-38 >seq1055 Length=5557 Score = 163 bits (180), Expect = 6e-38 Identities = 232/316 (73%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88 |||||||| | || ||||||| ||| |||| |||| | | | || ||| ||||||| Sbjct 1080 ACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTT-TAATGTTTGATGTTCTAAC 1022 Query 89 CG-GACGACGTATAACCG--TTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGG 145 ||| |||| | ||| ||| |||||||||| | ||| |||||||||||||||| Sbjct 1021 GTTGACC-CGTA-ATCCGGGTTGC--GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGG 966 Query 146 TCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATG 205 || ||||| ||||||||||||||| || | ||| | || | | ||| ||| | || | Sbjct 965 TCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGG 906 Query 206 CGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAG--TCTAGCAGGGAC 263 | ||||||| |||| ||| | ||||||||| | | | | | | |||||| | Sbjct 905 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCG--AGCGTGACGGCGCGAGCAGGTGC 848 Query 264 GAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 ||||| || | || |||||||| ||| |||||||||| |||| |||||| ||||||||| Sbjct 847 GAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAA 788 Query 324 AGCTACCCTGGGGATA 339 || ||| | ||||||| Sbjct 787 AGGTACTCCGGGGATA 772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982357285248