Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1055 392 7e-107 >seq1055 Length=5557 Score = 392 bits (434), Expect = 7e-107 Identities = 307/359 (86%), Gaps = 7/359 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| ||||| Sbjct 4777 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 4834 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4835 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4894 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| || Sbjct 4895 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 4954 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 || |||||||||||| | || ||| |||| ||| || |||||||||||||||| ||| Sbjct 4955 CCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTT 5014 Query 241 TCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 | | | |||| |||||||||||||| |||||||| |||||||||| | | || Sbjct 5015 T-GGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCA 5073 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAAGCAAGCTTCT 355 ||||| |||| || ||||||||||||||||||| ||| ||| | |||||||||||||| Sbjct 5074 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCAAAGAAGCAAGCTTCT 5132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071953389440