Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1055 470 4e-130 >seq1055 Length=5557 Score = 470 bits (520), Expect = 4e-130 Identities = 358/411 (87%), Gaps = 9/411 (2%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 2451 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 2507 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| ||| || Sbjct 2508 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGC 2563 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||| ||||||||| ||| | || || ||||||||||||||||| ||| | Sbjct 2564 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTTCGGCTCCCCTATTCGGTTAACCTT-G 2621 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 | || ||| ||||||||||||||||||||||||||||||||||||||| | | ||| | Sbjct 2622 CTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGT 2681 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||| Sbjct 2682 GCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTC 2741 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 2742 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTG 2801 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||||||||||| | | |||| ||| ||||||| Sbjct 2802 GAGGATGGTCCCCCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTC 2852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241546015232