Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1514 361 2e-97 seq1427 333 9e-89 seq1464 232 2e-58 seq2365 161 3e-37 seq1087 136 1e-29 >seq1514 Length=305774 Score = 361 bits (400), Expect = 2e-97 Identities = 295/364 (81%), Gaps = 33/364 (9%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-----CC 229 ||| || ||||| |||| ||| ||||||| | | |||||||||| ||| ||| || Sbjct 205008 CCGTTTTATTGAATAAGCAAAGAAACGATGACCGCAGTGGTATTTTACTGGCGACAAGCC 205067 Query 230 GAAACGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 ||| | ||||||||||||||||||| ||| ||| |||||| Sbjct 205068 GAAGCCCATCTCCCACTTATTCTACACCCGTCATGTCTCCTCACAA-------------- 205113 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||||||||||||||| |||| |||||||||| | |||||||||||| Sbjct 205114 ------------GGTCTTCTTTCCCCGCTAATTCTGCCAAGCCCGCTTCCTTGGCTGTGG 205161 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct 205162 TTTTGCTAGATAGTAGATAGGGACAGTAGGAAGCTCGTTAATCCATTCATGGGCGTCACT 205221 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 205222 AATTAGATGGCGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACT 205281 Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 ||||||| ||||||||| |||| |||||||||||||||||||| |||||||||| |||| Sbjct 205282 CGCGCTTCATTGAATTTCCTCACATTGACATTCAGAGCACTGGGTAGAAATCACACTGCG 205341 Query 528 TCAA 531 |||| Sbjct 205342 TCAA 205345 >seq1427 Length=392162 Score = 333 bits (368), Expect = 9e-89 Identities = 192/197 (97%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 80825 TTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGA 80884 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80885 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 80944 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 80945 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACATTGACAT 81004 Query 499 TCAGAGCACTGGGCAGA 515 ||||||||||||||||| Sbjct 81005 TCAGAGCACTGGGCAGA 81021 Score = 275 bits (304), Expect = 2e-71 Identities = 158/162 (98%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 81181 TAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 81240 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81241 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 81300 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 | |||||||||||||| |||||||||||||||||||||||| Sbjct 81301 TCATTGAATTTCTTCACATTGACATTCAGAGCACTGGGCAGA 81342 Score = 107 bits (118), Expect = 6e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 81082 TTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGA 81023 Query 379 ATCT 382 |||| Sbjct 81022 ATCT 81019 Score = 107 bits (118), Expect = 6e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 81403 TTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGA 81344 Query 379 ATCT 382 |||| Sbjct 81343 ATCT 81340 >seq1464 Length=363884 Score = 232 bits (256), Expect = 2e-58 Identities = 211/264 (80%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 |||||| |||||| | |||||| |||||||| ||||||||||||| | |||| ||||| Sbjct 79078 TCACAAGGTCGGATTGATGTCAAGTTCAACAGGATCTTCTTTCCCCGTTAATTCTGCCAA 79019 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 | ||||| ||||| ||| ||||||| | ||||| ||||||||||||| | |||| ||| Sbjct 79018 GTCCGTTTACTTGGTTGTTGTTTCGCCTGGTAGTAAATAGGGACAGTGGTACTCTCTTTA 78959 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 || || |||| ||||||||||||||||| |||||| ||||||| ||||||| | || Sbjct 78958 ATTTATCCATGGACGTCACTAATTAGATGATGAGGCACTTGGCTAACTTAAGATACTC-- 78901 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||| || || ||||||| | |||||| ||||||| ||||| |||| | ||||| || Sbjct 78900 AGTTCCTTCCACCGTTTATCAGCGCTTCACTGAATTTTTTCACATTGATAACCAGAGTAC 78841 Query 508 TGGGCAGAAATCACATTGCGTCAA 531 || ||||||| | | |||||||| Sbjct 78840 TGAGCAGAAA--ATACTGCGTCAA 78819 >seq2365 Length=1282112 Score = 161 bits (178), Expect = 3e-37 Identities = 201/274 (73%), Gaps = 16/274 (6%) Strand=Plus/Plus Query 207 GGTAGTGGTATTTCACTTGCG-----CCGAAACGGCTCCC--ACTTATTCTACACCTCTC 259 |||| |||||||| ||| || ||||| | ||| | ||||||| ||||| || Sbjct 601430 GGTAATGGTATTTTACTGTCGACAAGCCGAAGCCACTCTCTCACTTATTACACACCGGTC 601489 Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319 || || |||||||||||| | ||| | ||||||| | | ||| |||| ||| ||| Sbjct 601490 AAATCTCTTCACAAAGTCGAAGCAGACTGGAGCTCAATATGTTCTGCTTTTCCCAGTGAA 601549 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 || |||||||||||||| |||||||| ||| || |||| |||||||| |||| Sbjct 601550 TCTTTCAAGCCCGTTCCCT-GGCTGTGGCTTCAGTACATAGCAGATAGGGTCAGT----- 601603 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 ||||||| ||||| | | ||| ||||||||||| ||| |||||| |||||| | Sbjct 601604 ---CGTTAATTAATTCAAGTGTGTCTCTAATTAGATGTCGACACATTTGACTACCTCCTG 601660 Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||| ||||||||||||| | | |||||||||| Sbjct 601661 GGAGCCATAGTTACTCCCACAATATACCCGCGCT 601694 >seq1087 Length=3863 Score = 136 bits (150), Expect = 1e-29 Identities = 210/292 (72%), Gaps = 11/292 (4%) Strand=Plus/Minus Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAA--GTCGGACTAGAGTCAAGCTCAACAGG 300 ||||| |||||| | | ||| | | |||| |||||||||||| |||| ||| ||| Sbjct 1209 CTTATGCTACACTTTT--AGTGTGTCCTCAAATGGTCGGACTAGAGCCAAGTTCATCAGC 1152 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||| | ||| | | | |||||| |||| || | || ||| || |||| Sbjct 1151 CCTTTCTACCTACGCGAGTACTGGCAAGCCGGTTCAAAAGGATATGCTTTGCCTC-ATAG 1093 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 || || || || ||| |||||||||||||||| || ||| ||| ||||||||||| Sbjct 1092 CAGGGAGAGATAGCAGGACTCTCGTTAATCCATTCGTGGTCGTAGCTACTTAGATGACGA 1033 Query 421 GGCATTTGGCTACCTTAAGAGAGTCA-TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 || ||||| | |||| |||||| ||| | |||| ||||||| ||||| | |||| | | Sbjct 1032 GGTATTTGACGACCTGAAGAGA-TCAGTGGTTATTCCCGCCATTTACAAGTGCTTCATCG 974 Query 480 AATTTCTT--CACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 || ||| | ||||| || |||||||||| || || ||||||| ||| ||| Sbjct 973 AAGTTCCTTACACTTCGA--TTCAGAGCACCGGACAAAAATCACGTTGGGTC 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635128901504