Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1055 181 2e-43 >seq1055 Length=5557 Score = 181 bits (200), Expect = 2e-43 Identities = 214/287 (75%), Gaps = 11/287 (4%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| ||||| ||| |||| ||| | | | || Sbjct 4684 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTAACGTCAATGAGCAA-AGGT 4742 Query 61 GGAAGGTTTTATTCCCTTA--------TAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | ||| | |||||| | |||| | ||||||| ||| || ||||| || Sbjct 4743 ATTAACTTT-ACTCCCTTCCTCCCCGCTGAAAGTACTTTACAACCCGAAGG-CCTTCTTC 4800 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 | ||||| | |||||| |||| || || |||||| ||||||||| |||||||||| Sbjct 4801 ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC 4860 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| |||||||||||||||||||| ||||| | | |||||||||| | Sbjct 4861 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 4920 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | ||||||| ||||||||||| ||||||| ||||| Sbjct 4921 CTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAAT 4967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068753528576