Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1456 138 9e-28 seq2115 127 2e-24 >seq1456 Length=366961 Score = 138 bits (152), Expect = 9e-28 Identities = 530/839 (63%), Gaps = 39/839 (5%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || ||| || ||| || | ||| || || | ||||||||| | || | ||| Sbjct 311489 GAACCTCTGTTGAAACCGAACCCACATCGATTTGTTCTATTCCCCATCCAATACCACGAT 311430 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| | || || || || | || || || ||||| || |||||||||||| | Sbjct 311429 GTTTGGCAGTTTTATAAGAAAGCAGTCGCATCGTTTTGGACCGTTGAGGAGGTCGATCTC 311370 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 ||||| || | | ||||||| | || | | ||| |||| || ||||| | || Sbjct 311369 TCCAAGGATTTTAGTGACTGGAATAGTCTCAAGGTCGGCGAACGTCACTTCATCTCATAT 311310 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 ||||| || |||||||| || || || || || |||||||| | || |||||| Sbjct 311309 GTGTTAGCCTTCTTTGCTGCAAGTGATGGAATAGTGCTAGAGAATTTGGTCGAGCGTTTC 311250 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 || || || ||||| |||||| || ||||| || || | ||||| ||||| ||| Sbjct 311249 AGTCAAGAAGTTCAAGTTCCGGAGGTCCGGTGTTTTTATGGGATGCAGATCGCCATCGAG 311190 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAA 61386 || | || || |||||||| |||| || || || || |||| || | | ||| Sbjct 311189 AACATACATTCAGAGATGTATTCACTTCTGATTGACACATATATCAAAGATCCAACAGAA 311130 Query 61387 CGTGAACGA------------------------------------TTGTTCAATGCCATC 61410 || || || ||||||| |||||| Sbjct 311129 CGGTAAGGAATCTTATTTTAATTTGTGTATTCTCGCAGGGATTTCCTGTTCAACGCCATC 311070 Query 61411 GAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA 61470 | || | || || ||| ||| | ||||| |||| ||||| ||| Sbjct 311069 AGCAACCTAGAGTGTGTCGCGCAGAAGGCGCAATGGGCGCTCAACTGGATTGGTGATACT 311010 Query 61471 ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGT 61530 |||| |||| || || | | || ||||| | ||||||||| | || ||| | Sbjct 311009 CATTCTACGTTTGCGGAGCGTATAGTTGCCTTTGCTGCAGTCGAGGGTATTTTCTTCTCT 310950 Query 61531 GGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTC 61590 || || |||||||| |||||| |||| ||||| || | ||||| || | || ||| Sbjct 310949 GGCAGCTTCGCCGCAATATTTTGGCTGAAAAAACGCGGTTTGATGCCTGGGTTAACATTC 310890 Query 61591 AGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTC 61650 |||||||| |||| | || ||||| | || || || || || ||||| | | Sbjct 310889 AGCAATGAACTGATCAGTAGGGATGAGGGTCTACACTGCGACTTCGCCTGCTTGCTGTAC 310830 Query 61651 AAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCG 61710 ||| | || || | || | || | |||| |||||| || || || |||||| Sbjct 310829 AAATAC-AT-TGTTCAAAAG-CCTGCAAAGGATCGTGTGCTTGCCATCATTAAGGAGGCG 310773 Query 61711 GTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAAT 61770 ||| || ||||| | ||||| | || |||||||| || | || || ||||| Sbjct 310772 GTAGAAATAGAACAAAAGTTTCTTTCGGATGCTTTGCCAGTGAGTTTGATTGGTATGAAC 310713 Query 61771 TGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG 61829 || | |||| | || || ||||| | || ||||| |||||||| || ||||| Sbjct 310712 TGCAAGTTGATGTGTCGCTACATCGAATTCATCGCGGACCGGCTGTTGGTTGAATTGGG 310654 >seq2115 Length=135315 Score = 127 bits (140), Expect = 2e-24 Identities = 183/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 66283 ACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCAT 66342 || |||||| | ||||||| ||| |||| |||||| ||| || || || ||||| Sbjct 40257 ACCTGGACATTCGTGTGGATCCATGAGCGTCCAATCCTCATTGGCCTCCACTCGTCGCAT 40316 Query 66343 AAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC 66402 || | ||| |||||||||||||| ||||| | || || | || || || || Sbjct 40317 GAAGATATCCGGTATCCAGAGGGCATAGAACAAGTCTCGACCACGAATTTCTTCGGCACC 40376 Query 66403 GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGAT 66462 |||||| |||| || | ||||| || || ||| | |||||| ||||||||||||| Sbjct 40377 AGTATTTTTTCGCATTTCAATGAACTGAAGGACGTCCGGATGCCACGGTTCCAGGTAGAC 40436 Query 66463 GGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAA 66522 |||||| | || ||||| || |||||||||| ||||||||| || || || Sbjct 40437 GGCGAAAGCACCGGGGCGTTTATTTCCGCCTTGGTCGATGTAGCGAGCAGTGTTATTAAA 40496 Query 66523 GACACGCAACATCGGTAC 66540 ||||||||||| || || Sbjct 40497 CACACGCAACATGGGAAC 40514 Score = 122 bits (134), Expect = 7e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 66004 AAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAAT 66063 ||||| | ||| ||||| ||||| || || | || || || | | ||||||| | ||| Sbjct 37789 AAGGGAGATAGAAGCGAGATTGCAAACTGCAGTTTCATCCGGTGAGCTATACTCAATAAT 37848 Query 66064 TTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT 66123 || || ||||| ||||| || || ||||| |||| || ||| ||||| ||| | || Sbjct 37849 CTCTGTACACAGGTTACTACACCGGATGGTTCCCAGATGCTGATGATTGGACTTCCTGTT 37908 Query 66124 GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||| ||||||||||||| |||| | ||||| ||||| || | || | ||||||||| | Sbjct 37909 GCAAGCATCCTTGTACAGCATGAAGGGAGTTCCGGTTTCGATCTGAGCCTCAATGATTGA 37968 Query 66184 GTGCC 66188 ||||| Sbjct 37969 GTGCC 37973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397546932374720