Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq1097 508 2e-139 seq1110 385 2e-102 seq1131 165 3e-36 >seq1097 Length=3195 Score = 508 bits (562), Expect = 2e-139 Identities = 296/306 (97%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 5457 TACCCGGATATTATCGTGAGGATGCTTCATTGCCATTGCTCCCCAAATACAAAACCAATT 5516 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 314 TACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATT 373 Query 5517 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 5576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 433 Query 5577 ATGTACTTTTCATTCCGCTCAACCACGACATAATGCAGTCCTTCACGCTTCATACGTGGG 5636 |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| Sbjct 434 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGG 493 Query 5637 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGTGTCACCCACATGCTGTACTGCACCTGG 5696 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 494 TCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 553 Query 5697 GCCATGTAAGCCGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGG 5756 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 554 GCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 613 Query 5757 GAGGTA 5762 |||||| Sbjct 614 GAGGTA 619 >seq1110 Length=2318 Score = 385 bits (426), Expect = 2e-102 Identities = 313/377 (83%), Gaps = 3/377 (1%) Strand=Plus/Plus Query 26124 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 26183 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 1678 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 1737 Query 26184 CTGGAACAGGCGAATGCCACCATTACTGGCATGCAGGTGCGCCAGCGTGATGTTGCTGCG 26243 ||| | | |||||| || | ||||||| |||||| |||| |||||||||||||||||| Sbjct 1738 CTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCG 1797 Query 26244 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 26303 ||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||| Sbjct 1798 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGT 1857 Query 26304 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACCGTG 26363 | ||||||||||||||||||| || ||| ||||| || ||| || | | ||| Sbjct 1858 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG-TCAG--TCAGTG 1914 Query 26364 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 26423 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 1915 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 1974 Query 26424 GCTGAACGGGATTATTTCATCCTCAGAGAACGGTTGATGACAATGCAGAAGCAGCTGGAA 26483 ||||||||||||||||||| ||||||||| || |||| || ||||| || || |||||| Sbjct 1975 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAA 2034 Query 26484 GGGGCACAGGACTATAT 26500 || | ||| | ||||| Sbjct 2035 GGAACCCAGAAGTATAT 2051 >seq1131 Length=1733 Score = 165 bits (182), Expect = 3e-36 Identities = 121/141 (86%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26972 CCGGCGGCAAGATTCAATGACCCACGCAGAAAAATTTTCTGAACCTTTCTGGTCAAGAGC 27031 ||| ||||| | |||||||||||| || || ||||| | || ||||| || |||||||| Sbjct 158 CCGACGGCAGGCTTCAATGACCCAGGCTGAGAAATTCCCGGACCCTTTTTGCTCAAGAGC 217 Query 27032 GATGTTAATTTGTTCAATCATCTGGTTTGGAAATCGGATGTTGCGGGTTGTTGTTCTGCG 27091 ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 218 GATGTTAATTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCG 277 Query 27092 GGGCCGGTTTTTCGATGACAT 27112 || | ||| |||| |||||| Sbjct 278 GGTTCTGTTCTTCGTTGACAT 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175536536141808