Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq183909 273 7e-71 seq420478 264 4e-68 seq32369 255 2e-65 seq273507 226 9e-57 seq41031 199 1e-48 seq174525 172 2e-40 seq275020 170 6e-40 seq418288 127 7e-27 seq4318 122 3e-25 seq338527 109 2e-21 seq253439 104 8e-20 seq442262 102 3e-19 seq322867 87.8 6e-15 seq356084 86.0 2e-14 >seq183909 Length=1062 Score = 273 bits (302), Expect = 7e-71 Identities = 211/250 (84%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-------CGAAACGGCTC----CCA 242 || |||| || | ||| ||||||||||| | ||| ||||| ||| ||| Sbjct 715 AAGAAACAATGACGGTGGTGGTATTTCATTGACGCTCAGCCCCGAAAAACCTCGCTGCCA 656 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||||||||||| ||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 655 CTTATTCTACACCCGTCATGTCTCCTCACAAAGTCGGGCTACAGTCAAGCTCAACAGGGT 596 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||| ||| ||| || ||||||||||||||||||||| ||||||||||||||| Sbjct 595 CTTCTTTCCC-GCTACTTCTGCGAAGCCCGTTCCCTTGGCTGTGTTTTCGCTAGATAGTA 537 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 536 GATAGGGACAGTGGGAATCACGTTAATCCATTCATGCGCGTCACTAGTTAGATGATGAGG 477 Query 423 CATTTGGCTA 432 |||||||||| Sbjct 476 CATTTGGCTA 467 Score = 78.8 bits (86), Expect = 3e-12 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||| || || |||| || || |||| | |||| |||||||||||||| Sbjct 977 CTTTTACTCCACGCCAGGTTTCCGTCCTGGCTGAGCTCACCTTGGGACACCTGCGTTAAC 918 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 ||| ||||||| |||||||| |||||||||| ||| ||| |||| ||| Sbjct 917 ATTTGGCAGATGTACCGCCCCAATCAAACTCCCCGCCTAACATTGTCTTCA 867 >seq420478 Length=665 Score = 264 bits (292), Expect = 4e-68 Identities = 158/166 (95%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | Sbjct 11 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTGCCCA 70 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 || ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| Sbjct 71 GCTCGTTCCCTTGGCTATGGTTTCGCTAGCTAGTAGATAGGGAGAGTGGGAATCTCGTTA 130 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 131 ATCCACTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 176 >seq32369 Length=2212 Score = 255 bits (282), Expect = 2e-65 Identities = 219/270 (81%), Gaps = 12/270 (4%) Strand=Plus/Plus Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC---- 228 || || || | ||| ||| ||| |||| || | ||| ||||||||||| | ||| Sbjct 795 TTTCGTTTTACTGAATAATCAAAGAAACAATGACGGTGGTGGTATTTCATTGACGCTCAA 854 Query 229 ---CGAAACGGCTCCC----ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGAC 281 ||||| ||| | |||||||||||||| ||| ||| ||||||||||| || Sbjct 855 CCCCGAAAGACCTCGCTGTTACTTATTCTACACCCGTCATGTCTCCTCACAAAGTCGAAC 914 Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 ||||||||||||||||||||||||||||||| ||| || || |||||||||||||| | Sbjct 915 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCC-GCTACTTTTGCGAAGCCCGTTCCCTTAG 973 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 |||||||||||||||||||||||||||||||||| |||| ||| ||| |||| |||||| Sbjct 974 TTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGCAATCACGTGAATGCATTTATGCGC 1033 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||||||||||| ||||||||||||| Sbjct 1034 GTCACTAATTAGATGATGAGGCATTTGGCT 1063 >seq273507 Length=837 Score = 226 bits (250), Expect = 9e-57 Identities = 137/145 (94%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 274 AGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT 333 ||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||||||||| Sbjct 308 AGTCGGACTAGAGTCAATCTCAACAGGGTCTCCTTTCTCCGCTAATTCTGCCAAGCCCGT 367 Query 334 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 368 TCCCTTGGATGTGGTTTCGCTAGATAGTGGATAGGGACAGTGGGAATCTCGTTAATCCAT 427 Query 394 TCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||||||||| ||| Sbjct 428 TCATGCGCGTCACTAATTAGACGAC 452 >seq41031 Length=2030 Score = 199 bits (220), Expect = 1e-48 Identities = 121/128 (95%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 314 TCTTTCCCCGCCAATTCTGCCAAGCCCGTTCCTTTGGCTGTGGTCTCGCTAGATAGCAGA 255 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 TAGGGACAGTGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 195 Query 425 TTTGGCTA 432 |||||||| Sbjct 194 TTTGGCTA 187 >seq174525 Length=1098 Score = 172 bits (190), Expect = 2e-40 Identities = 122/140 (87%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||| ||||| |||||||||||| |||| |||| |||| |||||||||| |||||| | Sbjct 235 TCAATGGGGTCATCTTTCCCCGCTAATTCTGCCAGGCCCATTCCCTTGGCCATGGTTTTG 294 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||| Sbjct 295 CTAGATAGTAAATAGGGACGGTGGGAATCTCGTTAATCCATTCATGTCTGTCTCTAATTA 354 Query 413 GATGACGAGGCATTTGGCTA 432 | ||||||||||||||| || Sbjct 355 GTTGACGAGGCATTTGGTTA 374 >seq275020 Length=835 Score = 170 bits (188), Expect = 6e-40 Identities = 96/97 (99%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 336 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 395 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATTTCGTTAATCCATTC 60 Query 396 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||| Sbjct 61 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 97 >seq418288 Length=672 Score = 127 bits (140), Expect = 7e-27 Identities = 70/70 (100%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 60 Query 422 GCATTTGGCT 431 |||||||||| Sbjct 61 GCATTTGGCT 70 >seq4318 Length=4002 Score = 122 bits (134), Expect = 3e-25 Identities = 69/70 (99%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 70 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGA 11 Query 496 CATTCAGAGC 505 |||||||||| Sbjct 10 CATTCAGAGC 1 >seq338527 Length=766 Score = 109 bits (120), Expect = 2e-21 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 456 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 |||||||| ||||||||||| || |||||||||||||||| || ||||||||| |||||| Sbjct 128 CCGCCGTTGACCCGCGCTTGATTTAATTTCTTCACTTTGAGATGCAGAGCACTAGGCAGA 69 Query 516 AATCACATTGCGTCA 530 ||||||||||||||| Sbjct 68 AATCACATTGCGTCA 54 >seq253439 Length=868 Score = 104 bits (114), Expect = 8e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 ||||| | | | |||||||||| | | |||| ||||||||| |||| |||||||||||| Sbjct 154 TCATACTAATTACCGCCGTTTATTCACCCTTGATTGAATTTCCTCACCTTGACATTCAGA 95 Query 504 GCACTGGGCAGAAATCACATTGCGTCA 530 |||||||||||||||||||||| |||| Sbjct 94 GCACTGGGCAGAAATCACATTGTGTCA 68 >seq442262 Length=585 Score = 102 bits (112), Expect = 3e-19 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||||| ||||| ||||||||||||||||| |||||||||| || ||| || || Sbjct 189 GTCAAGTTCAACGAGGTCTTCTTTCCCCGCTAGTTCCGCCAAGTCCATTCTTTTCCTCGT 248 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||| ||||||||| |||| ||||||||||||| ||||||| ||| |||| | ||| Sbjct 249 ACGTTCCCTAGATAGTGGATATGGACAGTGGGAATTACGTTAATGTATTTATGCACCTCA 308 Query 406 CTAA 409 | || Sbjct 309 CGAA 312 >seq322867 Length=781 Score = 87.8 bits (96), Expect = 6e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 734 >seq356084 Length=750 Score = 86.0 bits (94), Expect = 2e-14 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1627374946624