Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq160970 150 5e-34 seq230871 93.3 1e-16 >seq160970 Length=1151 Score = 150 bits (166), Expect = 5e-34 Identities = 131/160 (82%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||| ||| |||||||||||||||| |||| | ||| |||| | ||| ||| || ||| Sbjct 1036 GCATGCATTGGCTCTAGAATTACCACAGTTACCTATGCAGTATG-TACGATCTAAAGAAC 978 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 ||| |||| |||||||||||||||| |||||||||| | | || ||||||||||| Sbjct 977 CATAGCTGAGTTAATGAGCCATTCGCGGTTTCACTGTTTGTAGGTCTG-TACTTAGACAT 919 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||| |||||||||| | ||| | |||||| Sbjct 918 GCATGGCTTAATCTCTGAGACAAGCGTTTGATTGCTGGCA 879 >seq230871 Length=913 Score = 93.3 bits (102), Expect = 1e-16 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 |||||| ||||||||| |||| || |||||||||||||| | ||| ||| || || Sbjct 835 ATGTATAAGCTCTAGATTTACTACAGTTATCCATGTAGT-ATGTAAGATCCAAGAAGTCT 777 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 || ||| ||||||||||| ||||| ||| || || | || | | ||||||||||| Sbjct 776 TAGCTGGTTTAATGAGCCGTTCGCGGTTACAGCGT-TTGACAGTCCGTGCTTAGACATGC 718 Query 466 ATGGCTTAATCTTTGAGA 483 |||| |||||| ||||| Sbjct 717 ATGGTTTAATCCCTGAGA 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503172162048