Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq31829 125 6e-24 seq26384 123 2e-23 seq18524 86.0 5e-12 >seq31829 Length=2224 Score = 125 bits (138), Expect = 6e-24 Identities = 233/337 (69%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| | |||||| || ||||| || || | || | || | |||| | ||| Sbjct 1780 GAGAATCCACATCGTTTTGTCTTGTTTCCAATACAATACCACGACGTATGGCAATTTTAC 1839 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || || || | || ||||||||||| || || ||||| ||| | || || ||| || Sbjct 1840 AAGAAAGCCGTTGCCTCCTTCTGGACAGTAGAAGAGGTTGATCTTTCAAAGGACTTGTCG 1899 Query 61162 GACTGGGAGC-GT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCT 61219 ||||| ||| || ||| | | || || | ||||| || | || ||||| |||| Sbjct 1900 CACTGG-AGCAGTCTTAAAGTG-GGCGAGCGTCATTTTATCTCCTACGTCTTGGCATTCT 1957 Query 61220 TTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGC 61279 | || || || || ||||| |||||||| | ||||||||| |||||||| | Sbjct 1958 TCGCTGCAAGCGATGGGATCGTACTAGAGAATTTGCTTGAACGTTTCAGTCAGGAGGTTC 2017 Query 61280 AAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGG 61339 | | ||||| || || || ||||| | ||||||||||| || || | ||||| | Sbjct 2018 AGATACCGGAGATACGCTGCTTTTACGGTATGCAGATTGCCATCGAAAACATTCACTCTG 2077 Query 61340 AGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 | |||||| | |||||||||| || ||||| | ||| Sbjct 2078 AAATGTACTCTCTTCTCATCGACACTTACATTAAGGA 2114 >seq26384 Length=2369 Score = 123 bits (136), Expect = 2e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 ||||||| || ||||| ||||| ||||| ||||| || || |||||||| | ||| || | Sbjct 1252 TATACTCAACTATTTCAGTGCAAAGATTGCTGCAACGAATAGTGCCCAAGTGCTGATGGT 1193 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||||||||| ||||||||||||| |||| | || || || ||||| | ||| | Sbjct 1192 TTGACTTGCGATTGCACGCATCCTTGTACAACATGAAAGGGGTTCCAGTCTCGATTTGAG 1133 Query 66171 ACTCAATGATGGCGTGCC 66188 || ||||||||||||| Sbjct 1132 CTTCGATGATGGCGTGCC 1115 >seq18524 Length=2666 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCG 66414 |||||||||||||| || | ||| || ||| | ||| || || ||| ||||| || Sbjct 2666 ATCCAGAGGGCGTAAAACAAATCTCGACCTCTTATCTCTTCGGCACCAGTG-TTTTTACG 2608 Query 66415 CAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 || || | || | || ||||||| ||||| |||||||| || || || || | ||| Sbjct 2607 CATTTCCACAAATTGCAAAATGTCGGGGTGCCAGGGTTCCAGATAAATAGCAAAGGCGCC 2548 Query 66475 CATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACAT 66534 ||| ||| || ||||| || ||||||||||| ||||||| || |||| ||| Sbjct 2547 AGGACGCTTGTTTCCTCCTTGATCTACGTAGCGAGCCGTGCTGTTGAAAACGCGCAGCAT 2488 Query 66535 CGGTAC 66540 ||||| Sbjct 2487 GGGTAC 2482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395249311116320