Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09-
24] 478,538 sequences; 547,921,014 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq31829 125 6e-24
seq26384 123 2e-23
seq18524 86.0 5e-12
>seq31829
Length=2224
Score = 125 bits (138), Expect = 6e-24
Identities = 233/337 (69%), Gaps = 4/337 (1%)
Strand=Plus/Plus
Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101
|||||||| | |||||| || ||||| || || | || | || | |||| | |||
Sbjct 1780 GAGAATCCACATCGTTTTGTCTTGTTTCCAATACAATACCACGACGTATGGCAATTTTAC 1839
Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161
|| || || | || ||||||||||| || || ||||| ||| | || || ||| ||
Sbjct 1840 AAGAAAGCCGTTGCCTCCTTCTGGACAGTAGAAGAGGTTGATCTTTCAAAGGACTTGTCG 1899
Query 61162 GACTGGGAGC-GT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCT 61219
||||| ||| || ||| | | || || | ||||| || | || ||||| ||||
Sbjct 1900 CACTGG-AGCAGTCTTAAAGTG-GGCGAGCGTCATTTTATCTCCTACGTCTTGGCATTCT 1957
Query 61220 TTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGC 61279
| || || || || ||||| |||||||| | ||||||||| |||||||| |
Sbjct 1958 TCGCTGCAAGCGATGGGATCGTACTAGAGAATTTGCTTGAACGTTTCAGTCAGGAGGTTC 2017
Query 61280 AAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGG 61339
| | ||||| || || || ||||| | ||||||||||| || || | ||||| |
Sbjct 2018 AGATACCGGAGATACGCTGCTTTTACGGTATGCAGATTGCCATCGAAAACATTCACTCTG 2077
Query 61340 AGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
| |||||| | |||||||||| || ||||| | |||
Sbjct 2078 AAATGTACTCTCTTCTCATCGACACTTACATTAAGGA 2114
>seq26384
Length=2369
Score = 123 bits (136), Expect = 2e-23
Identities = 110/138 (80%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110
||||||| || ||||| ||||| ||||| ||||| || || |||||||| | ||| || |
Sbjct 1252 TATACTCAACTATTTCAGTGCAAAGATTGCTGCAACGAATAGTGCCCAAGTGCTGATGGT 1193
Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170
| |||||||||||| ||||||||||||| |||| | || || || ||||| | ||| |
Sbjct 1192 TTGACTTGCGATTGCACGCATCCTTGTACAACATGAAAGGGGTTCCAGTCTCGATTTGAG 1133
Query 66171 ACTCAATGATGGCGTGCC 66188
|| |||||||||||||
Sbjct 1132 CTTCGATGATGGCGTGCC 1115
>seq18524
Length=2666
Score = 86.0 bits (94), Expect = 5e-12
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCG 66414
|||||||||||||| || | ||| || ||| | ||| || || ||| ||||| ||
Sbjct 2666 ATCCAGAGGGCGTAAAACAAATCTCGACCTCTTATCTCTTCGGCACCAGTG-TTTTTACG 2608
Query 66415 CAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474
|| || | || | || ||||||| ||||| |||||||| || || || || | |||
Sbjct 2607 CATTTCCACAAATTGCAAAATGTCGGGGTGCCAGGGTTCCAGATAAATAGCAAAGGCGCC 2548
Query 66475 CATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACAT 66534
||| ||| || ||||| || ||||||||||| ||||||| || |||| |||
Sbjct 2547 AGGACGCTTGTTTCCTCCTTGATCTACGTAGCGAGCCGTGCTGTTGAAAACGCGCAGCAT 2488
Query 66535 CGGTAC 66540
|||||
Sbjct 2487 GGGTAC 2482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395249311116320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |