Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3557 113 8e-23 seq14440 100 5e-19 seq54410 75.2 2e-11 seq14360 73.4 7e-11 >seq3557 Length=16379 Score = 113 bits (124), Expect = 8e-23 Identities = 176/246 (72%), Gaps = 7/246 (3%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || ||||||||||| ||||| ||||| || || |||||| |||| ||| | || | Sbjct 12006 ACGTTTACTTTGAACAAATTTGAGTGCTCGAACCAGGCCGATGTTGCCTGAAAAGTTTTG 12065 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186 ||| ||||||| ||| | ||| | || |||||||| |||| ||| | ||| ||| |||| Sbjct 12066 CATAGAATAATGGAACAAGACTT-CGTTTCTATTTCGTTGATTT-TCGGATCCGAAGTAA 12123 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||| || || || || | ||| || |||| || |||||| ||||| |||| Sbjct 12124 TGATCAAAAGAGACAGGCAGGGACGTTTGTATGGTTGCGTAAGAGGTTTAATTCATGGAC 12183 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||| ||||| |||||||| ||| |||| ||||||||||| || ||| | Sbjct 12184 CGTAACCAGACAAACTAAAGCGAAAGCATTCGTCAAGTATGTTTTCATTGGCCA-TGAGC 12242 Query 307 GAAAGT 312 |||||| Sbjct 12243 GAAAGT 12248 >seq14440 Length=8689 Score = 100 bits (110), Expect = 5e-19 Identities = 180/255 (71%), Gaps = 15/255 (6%) Strand=Plus/Plus Query 71 ACTTTTA---CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACAT 124 ||||||| || |||||||||| ||||| |||||||||| |||| ||| || | Sbjct 892 ACTTTTATCACTCTGAAAAAATTTGAGTGCTCAAAGCAGGTTGATGTTGCCTGAAAACTT 951 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCG 183 | |||||||||||| || | |||| | ||||||||||| |||||||| | ||| ||| | Sbjct 952 TTGCATGGAATAATGGAGTGGGACTT-CGGTTCTATTTCGTTGGTTT-TCGGATCCGAAG 1009 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||| ||| || || || || || || || ||| | |||| |||||||| || Sbjct 1010 TAAAGATCAAAAGAGACAGACGAGGACGTTTTTATGGTTGCGCTAGAGATGAAATTCATG 1069 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 | | | | || | || | |||||| ||| |||| ||||||||||| || || Sbjct 1070 G----ACCGTA-ACCATGTAAAGTGAAAGCATTCGTCAAGCATGTTTTCATTTGCCA-TG 1123 Query 304 AACGAAAGTTAGGGG 318 | ||||||| || || Sbjct 1124 AGCGAAAGTCAGAGG 1138 >seq54410 Length=2982 Score = 75.2 bits (82), Expect = 2e-11 Identities = 139/202 (69%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 97 TTCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||| |||||| |||| ||| | || ||||| |||||| ||||||||| | || Sbjct 1007 TTCAAACCAGGCCGATGTTGCCTGAAAAAGTTTGCATGAAATAATGGAATAGGACTT-CG 949 Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 || |||||| ||| |||| | | ||| ||||| || || || || || |||| || Sbjct 948 GTCCTATTTCGTTAGTTTTTGGATCCGAAGTAATTATCAAAAGAGACAGACGGGTACGTT 889 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 || | || |||||||||| | |||| |||| ||||| |||||||| Sbjct 888 TGTGTGGTTGTGCTAGAGGTGAAAATTATGGACCGTAACCAGACCAACTAAAGCGAAAGC 829 Query 274 GTTCACCAAGGATGTTTTCATT 295 ||| | | ||||||||||| Sbjct 828 ATTCGTTAGGCATGTTTTCATT 807 >seq14360 Length=8710 Score = 73.4 bits (80), Expect = 7e-11 Identities = 99/136 (73%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130 ||||||||||| ||||| |||| ||||| | |||| |||| || || |||| Sbjct 7370 TTTACTTTGAACAAATTTTAGTGCTCAAACCTGGCCGATGTTGCCTGAGAGGTTTTGCAT 7429 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||| | ||||||||| | |||||||||| ||||||||| | || |||||||| Sbjct 7430 GGAACAGGGGAATAGGAC-TTTGGTTCTATTTCGTTGGTTTCCGGATTCGAAGTAATGAT 7488 Query 191 TAATAGGGATAGTCGG 206 || || || |||||| Sbjct 7489 CAACAGAGACAGTCGG 7504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913916029312