Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09-
25] 140,294 sequences; 531,434,409 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq3557 113 8e-23
seq14440 100 5e-19
seq54410 75.2 2e-11
seq14360 73.4 7e-11
>seq3557
Length=16379
Score = 113 bits (124), Expect = 8e-23
Identities = 176/246 (72%), Gaps = 7/246 (3%)
Strand=Plus/Plus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127
|| ||||||||||| ||||| ||||| || || |||||| |||| ||| | || |
Sbjct 12006 ACGTTTACTTTGAACAAATTTGAGTGCTCGAACCAGGCCGATGTTGCCTGAAAAGTTTTG 12065
Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186
||| ||||||| ||| | ||| | || |||||||| |||| ||| | ||| ||| ||||
Sbjct 12066 CATAGAATAATGGAACAAGACTT-CGTTTCTATTTCGTTGATTT-TCGGATCCGAAGTAA 12123
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
|||| || || || || | ||| || |||| || |||||| ||||| ||||
Sbjct 12124 TGATCAAAAGAGACAGGCAGGGACGTTTGTATGGTTGCGTAAGAGGTTTAATTCATGGAC 12183
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306
|||| ||||| |||||||| ||| |||| ||||||||||| || ||| |
Sbjct 12184 CGTAACCAGACAAACTAAAGCGAAAGCATTCGTCAAGTATGTTTTCATTGGCCA-TGAGC 12242
Query 307 GAAAGT 312
||||||
Sbjct 12243 GAAAGT 12248
>seq14440
Length=8689
Score = 100 bits (110), Expect = 5e-19
Identities = 180/255 (71%), Gaps = 15/255 (6%)
Strand=Plus/Plus
Query 71 ACTTTTA---CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACAT 124
||||||| || |||||||||| ||||| |||||||||| |||| ||| || |
Sbjct 892 ACTTTTATCACTCTGAAAAAATTTGAGTGCTCAAAGCAGGTTGATGTTGCCTGAAAACTT 951
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCG 183
| |||||||||||| || | |||| | ||||||||||| |||||||| | ||| ||| |
Sbjct 952 TTGCATGGAATAATGGAGTGGGACTT-CGGTTCTATTTCGTTGGTTT-TCGGATCCGAAG 1009
Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243
||| ||| || || || || || || || ||| | |||| |||||||| ||
Sbjct 1010 TAAAGATCAAAAGAGACAGACGAGGACGTTTTTATGGTTGCGCTAGAGATGAAATTCATG 1069
Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303
| | | | || | || | |||||| ||| |||| ||||||||||| || ||
Sbjct 1070 G----ACCGTA-ACCATGTAAAGTGAAAGCATTCGTCAAGCATGTTTTCATTTGCCA-TG 1123
Query 304 AACGAAAGTTAGGGG 318
| ||||||| || ||
Sbjct 1124 AGCGAAAGTCAGAGG 1138
>seq54410
Length=2982
Score = 75.2 bits (82), Expect = 2e-11
Identities = 139/202 (69%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 97 TTCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153
|||||| |||||| |||| ||| | || ||||| |||||| ||||||||| | ||
Sbjct 1007 TTCAAACCAGGCCGATGTTGCCTGAAAAAGTTTGCATGAAATAATGGAATAGGACTT-CG 949
Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
|| |||||| ||| |||| | | ||| ||||| || || || || || |||| ||
Sbjct 948 GTCCTATTTCGTTAGTTTTTGGATCCGAAGTAATTATCAAAAGAGACAGACGGGTACGTT 889
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
|| | || |||||||||| | |||| |||| ||||| ||||||||
Sbjct 888 TGTGTGGTTGTGCTAGAGGTGAAAATTATGGACCGTAACCAGACCAACTAAAGCGAAAGC 829
Query 274 GTTCACCAAGGATGTTTTCATT 295
||| | | |||||||||||
Sbjct 828 ATTCGTTAGGCATGTTTTCATT 807
>seq14360
Length=8710
Score = 73.4 bits (80), Expect = 7e-11
Identities = 99/136 (73%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130
||||||||||| ||||| |||| ||||| | |||| |||| || || ||||
Sbjct 7370 TTTACTTTGAACAAATTTTAGTGCTCAAACCTGGCCGATGTTGCCTGAGAGGTTTTGCAT 7429
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||| | ||||||||| | |||||||||| ||||||||| | || ||||||||
Sbjct 7430 GGAACAGGGGAATAGGAC-TTTGGTTCTATTTCGTTGGTTTCCGGATTCGAAGTAATGAT 7488
Query 191 TAATAGGGATAGTCGG 206
|| || || ||||||
Sbjct 7489 CAACAGAGACAGTCGG 7504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913916029312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |