Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq24330 80.6 2e-13 seq1752 73.4 2e-11 seq45261 71.6 8e-11 >seq24330 Length=6232 Score = 80.6 bits (88), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 52 ACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAA 111 ||||| ||||| ||| ||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 4592 ACTAAACCATTCAATT-GGTAGTA-GCGACGGGCGGTGTGTACAAGAGGCAGGGACGTAA 4649 Query 112 TACAACGCAAGCT 124 | ||||||||||| Sbjct 4650 T-CAACGCAAGCT 4661 >seq1752 Length=20995 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||| ||||| ||||||||||| |||||||||||| |||||| Sbjct 6263 CTTACTAAACCATT-CACTCGATAGTA-GCGACGGGCGGTTTGTACAAAGGGCTGGGACG 6320 Query 109 TAATACAACGCAAGCT 124 |||| || ||||||| Sbjct 6321 TAAT-CAGTGCAAGCT 6335 >seq45261 Length=3657 Score = 71.6 bits (78), Expect = 8e-11 Identities = 52/58 (90%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||| | ||||||||||||| |||||||| ||||||||||||||| || |||||||| Sbjct 2015 TCGGTGG-AAGCGACGGGCGGTGTGTACAACGGGCAGGGACGTAAT-CAGCGCAAGCT 1960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300404370920