Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq42236 170 6e-40 seq40325 134 5e-29 seq60404 125 2e-26 seq60100 118 3e-24 seq120361 116 1e-23 seq67229 111 5e-22 seq49919 109 2e-21 seq2282 107 6e-21 seq8328 105 2e-20 seq85153 102 3e-19 seq37433 95.1 4e-17 seq21472 95.1 4e-17 seq124516 89.7 2e-15 seq64964 84.2 7e-14 seq45268 77.0 1e-11 seq27501 75.2 4e-11 >seq42236 Length=3922 Score = 170 bits (188), Expect = 6e-40 Identities = 96/97 (99%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 272 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||| ||||| Sbjct 271 ACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAA 235 Score = 156 bits (172), Expect = 1e-35 Identities = 89/91 (98%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2792 GACTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCATTTTGACATTC 2733 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||| Sbjct 2732 AGAGCACTGGGCAGAAATCACATTGCGTCAA 2702 >seq40325 Length=4103 Score = 134 bits (148), Expect = 5e-29 Identities = 160/212 (75%), Gaps = 19/212 (9%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA-- 232 |||||||| | | |||||||| |||| || | || |||||| ||||| | |||| Sbjct 606 CCGCTTCAATAAATAAGTAAAGAAACAATGATGGGAGTGGTTTTTCATA---GTCGAACG 662 Query 233 ACGG-CTCCCACTTATTCTACACCTCTC---AAGTCATTTCACAAAGTCGGACTAGAGTC 288 | || |||| | |||||| | | ||| ||| || ||||||||||||||| Sbjct 663 AGGGACTCCGAGGGG-----CACCTCCCGTAATGTCTCTTCGCAGAGTCGGACTAGAGTC 717 Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT-GGCTGTGG 347 ||| ||||||| |||| ||| |||||||| ||||||||| ||||||| |||||| | Sbjct 718 AAGTTCAACAGTGTCTCCTTG----GCTGATTCTGCCAAGCCCATTCCCTTTGGCTGTAG 773 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 ||||||||| ||||||||||||||||| |||| Sbjct 774 TTTCGCTAGCTAGTAGATAGGGACAGTAGGAA 805 Score = 84.2 bits (92), Expect = 7e-14 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| || ||||||| || ||| | || | |||||||||| ||| | | Sbjct 145 TTTACTCTATGCCAGGTTTCTGTCCTGGCTGAACTCACCGTGGGACACCTGCATTACGAT 204 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 | |||||||| ||||||||| |||||||||||||||||| |||| ||| Sbjct 205 CTGACAGATGTACCGCCCCAGTCAAACTCCCCACCTGACACTGTCTTCA 253 >seq60404 Length=2624 Score = 125 bits (138), Expect = 2e-26 Identities = 86/97 (89%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||| |||| ||||| ||||| | ||||||||||||||||||||| ||| Sbjct 1686 TTAAGAGAGTCAGCTTTACCCCCGCTGTTTAACTGCGCTTGGTTGAATTTCTTCAGTTTT 1745 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 || ||||||||||||||||||||||||||||| |||| Sbjct 1746 ACGTTCAGAGCACTGGGCAGAAATCACATTGCTTCAA 1782 >seq60100 Length=2644 Score = 118 bits (130), Expect = 3e-24 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||| | |||| ||| |||||||| ||| |||||||||||||||||| |||||||| Sbjct 2123 GAGAGTCAGACTTACCCCCACCGTTTACTCGCACTTGGTTGAATTTCTTCAGTTTGACAT 2064 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | ||||||||| ||||||||||||||| |||| Sbjct 2063 TTAGAGCACTGAGCAGAAATCACATTGTATCAA 2031 >seq120361 Length=755 Score = 116 bits (128), Expect = 1e-23 Identities = 67/69 (97%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 755 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGCAATCACA 696 Query 523 TTGCGTCAA 531 ||| ||||| Sbjct 695 TTGTGTCAA 687 >seq67229 Length=2277 Score = 111 bits (122), Expect = 5e-22 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| |||||||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 225 CTTAAAAGAGTCATAGCCACTCCCGCCGTTTACCCGCGCTTCTTTAAATTTATTCACTTT 284 Query 494 GACATTCAGAGCAC--TGGGCAGAAATCACATTGC 526 ||| | |||||||| || |||||||| ||||||| Sbjct 285 GACTTCCAGAGCACTGTGAGCAGAAATTACATTGC 319 >seq49919 Length=3294 Score = 109 bits (120), Expect = 2e-21 Identities = 65/68 (96%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3294 CCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTACATAGGGA 3235 Query 371 CAGTGGGA 378 |||| ||| Sbjct 3234 CAGTAGGA 3227 >seq2282 Length=19246 Score = 107 bits (118), Expect = 6e-21 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 ||| ||||| || ||||||| |||| |||||||||||| ||||||||||| ||| ||| Sbjct 6127 AGAATCATACGTATTCCCGCCATTTATCCGCGCTTGGTTTGATTTCTTCACTGTGAGATT 6186 Query 500 CAGAGCACTGGGCAGAAATCACATTGC 526 ||||||||||||||||||| ||||||| Sbjct 6187 CAGAGCACTGGGCAGAAATAACATTGC 6213 >seq8328 Length=11591 Score = 105 bits (116), Expect = 2e-20 Identities = 84/98 (86%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC-GCGCTTGGTTGAATTTCTTCACTTT 493 |||||||||||| ||||| ||| |||||||||| | |||||||||||||||||| ||| Sbjct 2191 TTAAGAGAGTCACAGTTATTCCGACCGTTTACCCAGTGCTTGGTTGAATTTCTTC--TTT 2134 Query 494 GA--CATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 || ||||||||||||||| |||||| ||||||||| Sbjct 2133 GAGGCATTCAGAGCACTGGAAAGAAATTGCATTGCGTC 2096 >seq85153 Length=1566 Score = 102 bits (112), Expect = 3e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||||| | | ||||||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 420 AGTTACCCGCACCGTTTACCCGCGTTTGGTTGAATTTCTTCAGTTCGACATTCAGAGCAC 361 Query 508 TGGGCAGAAATCACATTGCGTCAA 531 || |||| || ||||||| |||| Sbjct 360 CGGACAGATATGACATTGCATCAA 337 >seq37433 Length=4392 Score = 95.1 bits (104), Expect = 4e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 52 Score = 95.1 bits (104), Expect = 4e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4341 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 4392 >seq21472 Length=6806 Score = 95.1 bits (104), Expect = 4e-17 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55 TTGAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 1 Score = 80.6 bits (88), Expect = 9e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||| |||||||||||||| ||| ||| ||||||||||||| |||| |||||||||| Sbjct 3906 GACAGTAGGAATCTCGTTAATATATTTATGTGCGTCACTAATTAAATGAAGAGGCATTTG 3847 Query 429 GCTA 432 ||| Sbjct 3846 CCTA 3843 >seq124516 Length=696 Score = 89.7 bits (98), Expect = 2e-15 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 696 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 645 >seq64964 Length=2388 Score = 84.2 bits (92), Expect = 7e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 2218 TTGGTCGAATTTTTTCACTTTGACATTCAGAACACTGCGCAGAAATCACATTGCGGCAA 2160 >seq45268 Length=3657 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 38 TGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 |||| | |||| |||||||||||||| | ||| |||||||| | |||||| ||||||| Sbjct 2460 TGAGCTCACCTTGGGACACCTGCGTTACGATTTGACAGATGTATCACCCCAGTCAAACTC 2401 Query 98 CCCACCTGACAATGTCATCA 117 || ||||||| |||| ||| Sbjct 2400 TCCGCCTGACACTGTCTTCA 2381 >seq27501 Length=5681 Score = 75.2 bits (82), Expect = 4e-11 Identities = 73/92 (79%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 |||| ||||| || ||| |||||||||||| ||||| ||||| || ||||||||||| Sbjct 3241 AGAGACATAGATATAAGCGCTGTTTACCCGCGCATGGTTAAATTTATTAACTTTGACATT 3182 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||| || ||| ||||| ||||||||||| Sbjct 3181 TGGAGAAC-GGGGAGAAA--CCATTGCGTCAA 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632905912512