Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq30592 78.8 2e-12 seq48165 77.0 5e-12 seq7544 75.2 2e-11 seq3722 75.2 2e-11 seq53958 73.4 6e-11 seq39154 73.4 6e-11 seq20842 73.4 6e-11 seq17879 73.4 6e-11 seq444 73.4 6e-11 >seq30592 Length=5211 Score = 78.8 bits (86), Expect = 2e-12 Identities = 94/123 (76%), Gaps = 5/123 (4%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCT-GTCTGACCAGGCAG 59 |||||||||||||||| || |||||| ||||| || | || ||| || | | || Sbjct 4868 GTACGAGAGGAACCGCAGA-TTCAGAC--ATTGGAACGTGTGCCTTGTC-GAGCGGCTAG 4923 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 || |||||||||||||||| ||||| ||||||||||||||||| |||||| || Sbjct 4924 TGGTGCGAAGCTACCATCTGAGGGATTCAAACTGAACGCCTCTAAGTCTGAATCCTGTCC 4983 Query 120 AGA 122 ||| Sbjct 4984 AGA 4986 >seq48165 Length=3427 Score = 77.0 bits (84), Expect = 5e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGC-AG 59 ||||||||||||| | | |||||| | ||||| |||| ||| ||| |||| | Sbjct 2671 GTACGAGAGGAACATCAGG-TTCAGAC-ATTTGGTACATGCGCCTGG-TGAAGAGGCCAA 2615 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || |||||||||||||||| ||||| | ||||||||||||||||| |||||| Sbjct 2614 TGATGCGAAGCTACCATCTGAGAGATTAAGACTGAACGCCTCTAAGTCTGAATCC 2560 >seq7544 Length=12135 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 11140 CAGTGGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCG 11199 Query 117 GCCAGA 122 ||||| Sbjct 11200 TCCAGA 11205 >seq3722 Length=16146 Score = 75.2 bits (82), Expect = 2e-11 Identities = 88/114 (77%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCT-GTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| | ||||| | || | || ||| || | | || | Sbjct 15068 TACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTTGTC-GAGCGGCCAAT 15012 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||| |||||| | |||||| | |||||||||||| |||| |||||| Sbjct 15011 GGTGCGAAGCCACCATCGGAGGGATTAAGACTGAACGCCTCTTAGTCCGAATCC 14958 >seq53958 Length=3011 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||| |||||||| |||||| | ||||| || | ||| || | | || | Sbjct 882 GTACAAGAGAAACCGCGGG-TTCAGAC-ACTTGGTAAATGTGCCTGGTCGAGCGGCCAAT 939 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | |||||| |||||||||| | |||| ||| Sbjct 940 GATGCGAAGCTACCATCTGAGGGATTAAGACTGAACTCCTCTAAGTCTGGATCCCGTCCA 999 Query 121 GA 122 || Sbjct 1000 GA 1001 >seq39154 Length=4212 Score = 73.4 bits (80), Expect = 6e-11 Identities = 89/119 (75%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 4 CGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCC 63 ||||||||||||| | |||||| | ||||| || | | || | | || || | Sbjct 3552 CGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCTTAATCGAGCGGCCAATGGC 3495 Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122 ||||||||||||||||| |||||| | ||||| ||||||||||| ||||| ||||| Sbjct 3494 GCGAAGCTACCATCTGCGGGATTAAGACTGAATGCCTCTAAGTCTAAATCCCGTCCAGA 3436 >seq20842 Length=6948 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| ||||| | || || |||| ||| || | | || | Sbjct 883 GTACGAGAGGAACCGCGGG-TTCAGGC-ATTTAGTGCATGCGCCTGGTCGAGCGGCCAAT 826 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| | || ||| |||||| | ||||||||||||| ||| |||||| Sbjct 825 GGCGCGAAGCCAACAGCTGAGGGATTAGGACTGAACGCCTCTACGTCTGAATCC 772 >seq17879 Length=7645 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||| || | |||||| | ||||| || | ||| || ||| || | Sbjct 3818 GTAAGAGAGGAATTGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCAGCCAAT 3761 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 3760 AGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 3701 Query 121 GA 122 || Sbjct 3700 GA 3699 >seq444 Length=31187 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||| |||||||| | |||||| | ||| | || | ||| | | | || | Sbjct 5246 GTACGAGTGGAACCGCAGC-TTCAGAC-ATTTGATACATGTGCCTGGTCCAGCGGCCAAT 5303 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 5304 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCATCCA 5363 Query 121 GA 122 || Sbjct 5364 GA 5365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818086626816