Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09-
25] 140,294 sequences; 531,434,409 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq30592 78.8 2e-12
seq48165 77.0 5e-12
seq7544 75.2 2e-11
seq3722 75.2 2e-11
seq53958 73.4 6e-11
seq39154 73.4 6e-11
seq20842 73.4 6e-11
seq17879 73.4 6e-11
seq444 73.4 6e-11
>seq30592
Length=5211
Score = 78.8 bits (86), Expect = 2e-12
Identities = 94/123 (76%), Gaps = 5/123 (4%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCT-GTCTGACCAGGCAG 59
|||||||||||||||| || |||||| ||||| || | || ||| || | | ||
Sbjct 4868 GTACGAGAGGAACCGCAGA-TTCAGAC--ATTGGAACGTGTGCCTTGTC-GAGCGGCTAG 4923
Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
|| |||||||||||||||| ||||| ||||||||||||||||| |||||| ||
Sbjct 4924 TGGTGCGAAGCTACCATCTGAGGGATTCAAACTGAACGCCTCTAAGTCTGAATCCTGTCC 4983
Query 120 AGA 122
|||
Sbjct 4984 AGA 4986
>seq48165
Length=3427
Score = 77.0 bits (84), Expect = 5e-12
Identities = 89/115 (77%), Gaps = 4/115 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGC-AG 59
||||||||||||| | | |||||| | ||||| |||| ||| ||| |||| |
Sbjct 2671 GTACGAGAGGAACATCAGG-TTCAGAC-ATTTGGTACATGCGCCTGG-TGAAGAGGCCAA 2615
Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|| |||||||||||||||| ||||| | ||||||||||||||||| ||||||
Sbjct 2614 TGATGCGAAGCTACCATCTGAGAGATTAAGACTGAACGCCTCTAAGTCTGAATCC 2560
>seq7544
Length=12135
Score = 75.2 bits (82), Expect = 2e-11
Identities = 56/66 (85%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116
||||| |||||||||||||||| |||||| | ||||||||||||||||| ||||||
Sbjct 11140 CAGTGGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCG 11199
Query 117 GCCAGA 122
|||||
Sbjct 11200 TCCAGA 11205
>seq3722
Length=16146
Score = 75.2 bits (82), Expect = 2e-11
Identities = 88/114 (77%), Gaps = 4/114 (4%)
Strand=Plus/Minus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCT-GTCTGACCAGGCAGT 60
||||||||||||||| | |||||| | ||||| | || | || ||| || | | || |
Sbjct 15068 TACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTTGTC-GAGCGGCCAAT 15012
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||| |||||| | |||||| | |||||||||||| |||| ||||||
Sbjct 15011 GGTGCGAAGCCACCATCGGAGGGATTAAGACTGAACGCCTCTTAGTCCGAATCC 14958
>seq53958
Length=3011
Score = 73.4 bits (80), Expect = 6e-11
Identities = 91/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| |||| |||||||| |||||| | ||||| || | ||| || | | || |
Sbjct 882 GTACAAGAGAAACCGCGGG-TTCAGAC-ACTTGGTAAATGTGCCTGGTCGAGCGGCCAAT 939
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||||| |||||| | |||||| |||||||||| | |||| |||
Sbjct 940 GATGCGAAGCTACCATCTGAGGGATTAAGACTGAACTCCTCTAAGTCTGGATCCCGTCCA 999
Query 121 GA 122
||
Sbjct 1000 GA 1001
>seq39154
Length=4212
Score = 73.4 bits (80), Expect = 6e-11
Identities = 89/119 (75%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 4 CGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCC 63
||||||||||||| | |||||| | ||||| || | | || | | || || |
Sbjct 3552 CGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCTTAATCGAGCGGCCAATGGC 3495
Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122
||||||||||||||||| |||||| | ||||| ||||||||||| ||||| |||||
Sbjct 3494 GCGAAGCTACCATCTGCGGGATTAAGACTGAATGCCTCTAAGTCTAAATCCCGTCCAGA 3436
>seq20842
Length=6948
Score = 73.4 bits (80), Expect = 6e-11
Identities = 86/114 (75%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| ||||| | || || |||| ||| || | | || |
Sbjct 883 GTACGAGAGGAACCGCGGG-TTCAGGC-ATTTAGTGCATGCGCCTGGTCGAGCGGCCAAT 826
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||| | || ||| |||||| | ||||||||||||| ||| ||||||
Sbjct 825 GGCGCGAAGCCAACAGCTGAGGGATTAGGACTGAACGCCTCTACGTCTGAATCC 772
>seq17879
Length=7645
Score = 73.4 bits (80), Expect = 6e-11
Identities = 91/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| |||||||| || | |||||| | ||||| || | ||| || ||| || |
Sbjct 3818 GTAAGAGAGGAATTGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCAGCCAAT 3761
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||||||||||||||| |||||| | ||||||||||||||||| |||||| |||
Sbjct 3760 AGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 3701
Query 121 GA 122
||
Sbjct 3700 GA 3699
>seq444
Length=31187
Score = 73.4 bits (80), Expect = 6e-11
Identities = 91/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||| |||||||| | |||||| | ||| | || | ||| | | | || |
Sbjct 5246 GTACGAGTGGAACCGCAGC-TTCAGAC-ATTTGATACATGTGCCTGGTCCAGCGGCCAAT 5303
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||||| |||||| | ||||||||||||||||| |||||| |||
Sbjct 5304 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCATCCA 5363
Query 121 GA 122
||
Sbjct 5364 GA 5365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818086626816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |