Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq36919 125 6e-24 seq31935 123 2e-23 >seq36919 Length=4449 Score = 125 bits (138), Expect = 6e-24 Identities = 231/337 (69%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || | || ||||| | | || ||| ||||| | ||||| |||| | ||| Sbjct 1896 GAGAACCCGAGACGGTTCGTGATCATGCCTATCCAGTATCATGATATCTGGCAGTTTTAC 1955 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || || |||| ||||| || ||||| || || || || || ||| | |||||| | | Sbjct 1956 AAGAAAGCGGTGGCTTCATTTTGGACCGTTGAAGAAGTTGACTTGGCGAAAGACCTTGGT 2015 Query 61162 GACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTT 61221 |||||||| | || | ||| || | || |||||| | | || | || || ||| Sbjct 2016 GACTGGGAATCTCTAAAGGACGGCGAGAAGCACTTCATTTCATACGTCCTTGCCTTTTTT 2075 Query 61222 GCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGG--AACGTTTCGCGCAGGAGGTGC 61279 ||||| ||||| || || ||||| ||| | ||| ||| ||| || || || | Sbjct 2076 GCCGCAAGCGACGGAATAGTAAATGAAAATCTTGTGGCGAAC--TTCAGTCAAGAAGTAC 2133 Query 61280 AAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGG 61339 | | | || || || |||||||| |||||||||||||| || || ||| | || || | Sbjct 2134 AGATCCCAGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCAATCGAAAATATTCATTCAG 2193 Query 61340 AGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||| |||| ||||| ||||| || | ||| Sbjct 2194 AGATGTATTCCCTTCTTATCGACACGTATATTAAGGA 2230 >seq31935 Length=5035 Score = 123 bits (136), Expect = 2e-23 Identities = 298/446 (67%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||||||||| ||| | |||| |||||||| ||| ||| ||| || | ||| | | Sbjct 1871 TTCACCCCAACAATCGAAAAGACCTGGACACTCGTGAGGATCCATAAGTGTCCACTTGTC 1812 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | | | || || |||||||||| ||||| | ||| || || ||| ||||| || Sbjct 1811 GTTGTCTCGCACGCGTCGCATAAATAAGTCAGGAACCCAAAGAGCCATGAAAAGATCACG 1752 Query 66382 TGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 |||| ||| || ||| ||| |||||||| | || | ||||| | ||||| | Sbjct 1751 AGCTCTAGTCTCTTCGGCGCCAGTG-TTTTTGCGTAGCTCTACGAACTGCAGAATGTCTG 1693 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 |||||||| |||| ||| || ||||| | || || ||| ||||||||||||| Sbjct 1692 GGTGCCATGGCTCCAAGTAAATCGCGAAGGCACCTGGTCGCTTGTTTCCACCTTGGTCGA 1633 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 |||| || || ||||||||||| || | ||| || || | || || || | |||| Sbjct 1632 CGTACCGCGCTGTGTTGTTGAAGACGCGGAGCATTGGGACCAAGCCATTGGACTCTCCAT 1573 Query 66561 TGGTGCCGTCGATGGGGGATCCTCGTGC-CCGTATATCGTGAACATTCAGACCAATACCA 66619 | || || | || | | | | ||| || ||| |||||| || ||||| || ||| Sbjct 1572 TCGTTCCCGCTATAAAAG-TACCCTTGCTTCGGATACAGTGAACGTTGAGACCGATTCCA 1514 Query 66620 CCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAG 66679 || || | ||||| || ||||| | || ||| | ||||| |||||| | Sbjct 1513 CCAGCATTTTTCGATATAAGCGCACACTGCTTCAATGTATCATAAATGCCCTCAATGCTG 1454 Query 66680 TCACCCTTGATGGTCAGGAGGTAGCA 66705 || |||| || || || ||||| || Sbjct 1453 TCGTCCTTCATTGTGAGAAGGTAACA 1428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396888225064160