Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq748 134 2e-29 seq819 132 7e-29 >seq748 Length=96453 Score = 134 bits (148), Expect = 2e-29 Identities = 163/219 (74%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||||||| | Sbjct 68629 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCGCTTACTAGGAATC-C 68572 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||| | | |||||| ||| | ||||| || ||| || || Sbjct 68571 CTCGTCCACGGGGCACAATTCCAAGCCCCGATCCC--------TGTGATTGACCAGTTTG 68520 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| |||| | || | | ||||||||| | ||| ||||||||||||||| Sbjct 68519 CCCAACCCTCTCGGGCCAGAAGGTCTCACTCGTTGACACCGTCATTGTAGCGCGCGTGCG 68460 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||| | |||||||||||||||||||||| ||||||||| Sbjct 68459 GCCCTGGACATCTAAGGGCATCACAGACCCGTTATTGCC 68421 >seq819 Length=201516 Score = 132 bits (146), Expect = 7e-29 Identities = 166/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| ||||| || ||||||||||||| | Sbjct 89056 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACCTGCACTTACTAGGAATT-C 88999 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | ||||||| ||| | ||||| |||||| | || | || || Sbjct 88998 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCACGACGGTGATTGACCAGTTT 88939 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| || | | ||| ||||| | ||| |||||||||||||| Sbjct 88938 GCCCAACCCTCTCGGGACAGAAGGTCTCACTTGTTGACACCGTCATTGTAGCGCGCGTGC 88879 Query 179 GGC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| ||||| || ||||||||||| ||||||||||||||| Sbjct 88878 GGCTCCAGA-CACCTAAGGGCATCGCAGACCTGTTATTGC 88840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751993028255