Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq792 773 0.0 seq925 147 9e-33 seq819 143 1e-31 >seq792 Length=154596 Score = 773 bits (856), Expect = 0.0 Identities = 540/608 (89%), Gaps = 5/608 (1%) Strand=Plus/Plus Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138 ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 151025 AAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCACACAAGTAGAGTGATCGA 151084 Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 151085 AAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGC 151144 Query 199 GCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCG-GCCGGTGCACT-CTTC 256 |||||| |||||||| |||| | | | ||| ||||| ||| ||||||| ||| | | Sbjct 151145 GCTTGCGACCAGACTCGCCCACGGG-GTTCAGCCGGCAT-TCGTGCCGGTGTACTTCCCC 151202 Query 257 TGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC-CCCC 315 |||| | ||||||| || | | |||||| ||| |||||||| ||||||| | |||| Sbjct 151203 CGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCTCGGAATGTAACGCCCC 151262 Query 316 TTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCC 375 ||||| || |||||||| ||||| |||||||| ||| ||| |||| |||||| | Sbjct 151263 CCCGGGGCGTCTTATAGCCGAGGGTGCCATGCGGCCAGCCCAGACCGAGGAACGCGCTTC 151322 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 |||| ||| |||||| ||||||| ||||||| ||||||||| |||||||||||||||||| Sbjct 151323 GGCTCGGACGCTGGCATAATGGTCGTAAGCGACCCGTCTTGTAACACGGACCAAGGAGTC 151382 Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495 ||||||||| ||||||||| |||||||||||||||||||| | |||||| |||||||||| Sbjct 151383 TAACATCTACGCGAGTGTTCGGGTGTCAAACCCGTGCGCGCAGTGAAAGCGAACGGAGGT 151442 Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555 |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 151443 GGGAACCCCTCGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTATG 151502 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 151503 AGCGTAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 151562 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 151563 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTAT 151622 Query 676 AGGGGCGA 683 |||||||| Sbjct 151623 AGGGGCGA 151630 Score = 571 bits (632), Expect = 2e-160 Identities = 419/481 (87%), Gaps = 5/481 (1%) Strand=Plus/Plus Query 206 ACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCG-GCCGGTGCACT-CTTCTGCGGTC 263 |||||||| |||| | | | ||| ||||| ||| ||||||| ||| | | |||| | Sbjct 152875 ACCAGACTCGCCCACGGG-GTTCAGCCGGCAT-TCGTGCCGGTGTACTTCCCCCGCGGGC 152932 Query 264 AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC-CCCCTTCGGGG 322 ||||||| || | | |||||| ||| |||||||| ||||||| | |||| ||||| Sbjct 152933 GGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCTCGGAATGTAACGCCCCCCCGGGG 152992 Query 323 GGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGG 382 || |||||||| ||||| |||||||| ||| ||| |||| |||||| ||||| || Sbjct 152993 CGTCTTATAGCCGAGGGTGCCATGCGGCCAGCCCAGACCGAGGAACGCGCTTCGGCTCGG 153052 Query 383 ATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC 442 | |||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 153053 ACGCTGGCATAATGGTCGTAAGCGACCCGTCTTGTAACACGGACCAAGGAGTCTAACATC 153112 Query 443 TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502 || ||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||| Sbjct 153113 TACGCGAGTGTTCGGGTGTCAAACCCGTGCGCGCAGTGAAAGCGAACGGAGGTGGGAACC 153172 Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 | | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 153173 CCTCGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTATGAGCGTAG 153232 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153233 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 153292 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 153293 GGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 153352 Query 683 A 683 | Sbjct 153353 A 153353 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 149586 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 149645 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 149646 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 149705 >seq925 Length=809793 Score = 147 bits (162), Expect = 9e-33 Identities = 110/128 (86%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||||| ||||| |||||||||||||||||||||||| || |||| |||||||||||| Sbjct 58683 AGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAGG 58742 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||| || |||| ||||| ||||||||||| ||||| || || |||| Sbjct 58743 AAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGTTCGTC-AACGTGAGTAT 58801 Query 676 AGGGGCGA 683 |||||||| Sbjct 58802 AGGGGCGA 58809 >seq819 Length=201516 Score = 143 bits (158), Expect = 1e-31 Identities = 105/122 (86%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 93160 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 93219 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| |||||||||| || |||| ||||| || ||||||||||||||||| |||||| Sbjct 93220 GAAACCCTGGTGGAGGACCGTAGCGATTCTGACGCGCAAATCGATCGTCAAACGTGGGTA 93279 Query 675 TA 676 || Sbjct 93280 TA 93281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079979472350