Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01-
28] 957 sequences; 110,837,706 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq792 773 0.0
seq925 147 9e-33
seq819 143 1e-31
>seq792
Length=154596
Score = 773 bits (856), Expect = 0.0
Identities = 540/608 (89%), Gaps = 5/608 (1%)
Strand=Plus/Plus
Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138
||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 151025 AAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCACACAAGTAGAGTGATCGA 151084
Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 151085 AAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGC 151144
Query 199 GCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCG-GCCGGTGCACT-CTTC 256
|||||| |||||||| |||| | | | ||| ||||| ||| ||||||| ||| | |
Sbjct 151145 GCTTGCGACCAGACTCGCCCACGGG-GTTCAGCCGGCAT-TCGTGCCGGTGTACTTCCCC 151202
Query 257 TGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC-CCCC 315
|||| | ||||||| || | | |||||| ||| |||||||| ||||||| | ||||
Sbjct 151203 CGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCTCGGAATGTAACGCCCC 151262
Query 316 TTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCC 375
||||| || |||||||| ||||| |||||||| ||| ||| |||| |||||| |
Sbjct 151263 CCCGGGGCGTCTTATAGCCGAGGGTGCCATGCGGCCAGCCCAGACCGAGGAACGCGCTTC 151322
Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435
|||| ||| |||||| ||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 151323 GGCTCGGACGCTGGCATAATGGTCGTAAGCGACCCGTCTTGTAACACGGACCAAGGAGTC 151382
Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495
||||||||| ||||||||| |||||||||||||||||||| | |||||| ||||||||||
Sbjct 151383 TAACATCTACGCGAGTGTTCGGGTGTCAAACCCGTGCGCGCAGTGAAAGCGAACGGAGGT 151442
Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 151443 GGGAACCCCTCGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTATG 151502
Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151503 AGCGTAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 151562
Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 151563 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTAT 151622
Query 676 AGGGGCGA 683
||||||||
Sbjct 151623 AGGGGCGA 151630
Score = 571 bits (632), Expect = 2e-160
Identities = 419/481 (87%), Gaps = 5/481 (1%)
Strand=Plus/Plus
Query 206 ACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCG-GCCGGTGCACT-CTTCTGCGGTC 263
|||||||| |||| | | | ||| ||||| ||| ||||||| ||| | | |||| |
Sbjct 152875 ACCAGACTCGCCCACGGG-GTTCAGCCGGCAT-TCGTGCCGGTGTACTTCCCCCGCGGGC 152932
Query 264 AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC-CCCCTTCGGGG 322
||||||| || | | |||||| ||| |||||||| ||||||| | |||| |||||
Sbjct 152933 GGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCTCGGAATGTAACGCCCCCCCGGGG 152992
Query 323 GGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGG 382
|| |||||||| ||||| |||||||| ||| ||| |||| |||||| ||||| ||
Sbjct 152993 CGTCTTATAGCCGAGGGTGCCATGCGGCCAGCCCAGACCGAGGAACGCGCTTCGGCTCGG 153052
Query 383 ATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC 442
| |||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 153053 ACGCTGGCATAATGGTCGTAAGCGACCCGTCTTGTAACACGGACCAAGGAGTCTAACATC 153112
Query 443 TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502
|| ||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 153113 TACGCGAGTGTTCGGGTGTCAAACCCGTGCGCGCAGTGAAAGCGAACGGAGGTGGGAACC 153172
Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562
| | |||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 153173 CCTCGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTATGAGCGTAG 153232
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153233 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 153292
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 153293 GGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 153352
Query 683 A 683
|
Sbjct 153353 A 153353
Score = 149 bits (164), Expect = 3e-33
Identities = 105/120 (88%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 149586 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 149645
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 149646 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 149705
>seq925
Length=809793
Score = 147 bits (162), Expect = 9e-33
Identities = 110/128 (86%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615
||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 58683 AGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAGG 58742
Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675
||||||||||||||| || |||| ||||| ||||||||||| ||||| || || ||||
Sbjct 58743 AAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGTTCGTC-AACGTGAGTAT 58801
Query 676 AGGGGCGA 683
||||||||
Sbjct 58802 AGGGGCGA 58809
>seq819
Length=201516
Score = 143 bits (158), Expect = 1e-31
Identities = 105/122 (86%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
|||||| ||||| |||||||||||||||||||||||| || |||| |||||||||||
Sbjct 93160 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 93219
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||| |||||||||| || |||| ||||| || ||||||||||||||||| ||||||
Sbjct 93220 GAAACCCTGGTGGAGGACCGTAGCGATTCTGACGCGCAAATCGATCGTCAAACGTGGGTA 93279
Query 675 TA 676
||
Sbjct 93280 TA 93281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079979472350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |