Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq925 232 1e-58 seq777 80.6 5e-13 >seq925 Length=809793 Score = 232 bits (256), Expect = 1e-58 Identities = 211/273 (77%), Gaps = 35/273 (13%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| Sbjct 59845 CATCAGTAGGGTAAAACTAACCTCTCTCACGACCATCTAAACCCAGCTCACGTTCCCTAT 59786 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||| ||| |||||||||||||| || Sbjct 59785 TAGTGGGTGAACAAGACAA------------------------TGATAGGAAGAGCCTAC 59750 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| ||||||||||| | ||| ||||||||| |||||| ||||||| ||||||||||| Sbjct 59749 ATCAAAGGATCAAAAGTCGGCGTAGCTATGAACACTTGGCCGCCACAAACCAGTTATCCC 59690 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA------GGGA-----CTAAAG 260 |||||||||||||||| | |||| || ||||| || || ||| | |||| Sbjct 59689 TGTGGTAACTTTTCTGAAAACTCTTGCGTCAAACTTGGAATGTGGTGGAATTATCAAAAG 59630 Query 261 GATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||||||||| ||| ||||||| Sbjct 59629 GATCGATAGGCCACACTTTCACGGTGTGTATTC 59597 >seq777 Length=127284 Score = 80.6 bits (88), Expect = 5e-13 Identities = 126/178 (71%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 71 AACCCAGCTCACGTTCCC-TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||| |||| |||||| |||||||||| | | |||||| ||||| ||||| |||| Sbjct 88587 AACCCAACTCAGGTTCCCCTATTAGTGGGAGGAAAATCCACTGCTTAATAAATTCCGCTT 88646 Query 130 CGGTATGATAGGAA---GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 | || || | || ||||| | | | ||| | ||| | |||| |||| ||| Sbjct 88647 C---ATCATTGCAAGTTGAGCCAAAAGAAAGGGAGCTGGAAGTGAGGTCGTCATGATCGC 88703 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 | ||| | |||||| ||||||||| ||| ||| || || ||||||| | ||||| Sbjct 88704 TCAGCTATCGCAAGCCTGTTATCCCTACGGTTACTGTTATGACACCTCTTGGTTCAAA 88761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854391823392