Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq925 129 2e-27 >seq925 Length=809793 Score = 129 bits (142), Expect = 2e-27 Identities = 91/103 (88%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 241 CACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||| ||||||| ||| || ||||||||||||||||||||||||||| ||||| Sbjct 59162 CACTTATTGCTACACCCACCAAATCTCTTCACAAAGTCGGACTAGAGTCAAGCTGAACAG 59103 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 |||||||||||||| ||||||| |||||||| | ||||||||| Sbjct 59102 GGTCTTCTTTCCCCACTGATTCTGCCAAGCCTGCTCCCTTGGC 59060 Score = 86.0 bits (94), Expect = 2e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81 || ||||||| || |||| | ||| |||||||||||||| | ||| |||||||| | Sbjct 59548 AGGTTTCTGTCCTGGCTGAGCTCATCTTGGGACACCTGCGTTACGATTTGACAGATGTAC 59489 Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||| ||||| |||| ||||| |||||| Sbjct 59488 CGCCCCAGTCAAACACCCCGCCTGATAATGTC 59457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635184351136