Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01-
28] 957 sequences; 110,837,706 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq117 379 6e-103
seq934 167 7e-39
seq592 75.2 3e-11
>seq117
Length=1141
Score = 379 bits (420), Expect = 6e-103
Identities = 417/554 (75%), Gaps = 53/554 (10%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 554 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 495
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 435
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 434 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 375
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 374 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 315
Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285
|| | |||||| | | ||||| || ||||||| || |||
Sbjct 314 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCACC 255
Query 286 -----------CCGAAGGGCGTTG--------GTTTTTTATCTAATAAATACACCCCTTC 326
||| ||| | || | |||| |||| |||||| ||| | | |
Sbjct 254 CCCGGCCGGGGCCGGGGGGAGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCC 195
Query 327 CGAAGTC----GGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 375
| || ||||| | |||||||||||||||||||||||||| |||||
Sbjct 194 CCCCCTCGCGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTAT 135
Query 376 CCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430
||| |||| | || | | | |||| ||| ||||||||||||||||||||||||||
Sbjct 134 CCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCA 75
Query 431 GTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490
||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 74 GTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 15
Query 491 ATGACTACTGGCAG 504
||| ||||||||||
Sbjct 14 ATG-CTACTGGCAG 2
>seq934
Length=1037200
Score = 167 bits (184), Expect = 7e-39
Identities = 135/161 (84%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403
|||||||||||||||||| ||| || ||||||||| || || || ||| |||||||
Sbjct 878099 GCATGTATTAGCTCTAGAGTTATTACAGTTATCCATCTAACG-GGCACGATCCAATAAAC 878157
Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463
||| ||||||||||||||||||||| || |||| |||| | || | ||| ||||||
Sbjct 878158 CATAGCTGATTTAATGAGCCATTCGCGGTCTCACCGTATTAAGGCCTGA-ACTGAGACAT 878216
Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||| |||||||||||||||
Sbjct 878217 GCATGGCTTAATCTTTGAGACAAGCCTATGACTACTGGCAG 878257
>seq592
Length=12611
Score = 75.2 bits (82), Expect = 3e-11
Identities = 82/107 (77%), Gaps = 3/107 (3%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACA-AGACCC--AAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||||||||| ||||| || | | | | ||| || | || ||| || | ||||| |||
Sbjct 9755 ACTCATTCCGATTACGGAGCCTCTTAGAGGAGTCCCGCATAGGTAGTTTTCGTCACCACC 9696
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG 106
||||| || |||| |||||||||||||||||||||| || || |||
Sbjct 9695 TCCCCATGCTGGGAGTGGGTAATTTGCGCGCCTGCTGTCTGCCCTGG 9649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510385545472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |