Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq117 379 6e-103 seq934 167 7e-39 seq592 75.2 3e-11 >seq117 Length=1141 Score = 379 bits (420), Expect = 6e-103 Identities = 417/554 (75%), Gaps = 53/554 (10%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 554 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 495 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 494 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 435 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 434 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 375 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 374 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 315 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 314 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCACC 255 Query 286 -----------CCGAAGGGCGTTG--------GTTTTTTATCTAATAAATACACCCCTTC 326 ||| ||| | || | |||| |||| |||||| ||| | | | Sbjct 254 CCCGGCCGGGGCCGGGGGGAGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCC 195 Query 327 CGAAGTC----GGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 375 | || ||||| | |||||||||||||||||||||||||| ||||| Sbjct 194 CCCCCTCGCGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTAT 135 Query 376 CCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 ||| |||| | || | | | |||| ||| |||||||||||||||||||||||||| Sbjct 134 CCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCA 75 Query 431 GTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 ||||||||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct 74 GTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 15 Query 491 ATGACTACTGGCAG 504 ||| |||||||||| Sbjct 14 ATG-CTACTGGCAG 2 >seq934 Length=1037200 Score = 167 bits (184), Expect = 7e-39 Identities = 135/161 (84%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||||||||| ||| || ||||||||| || || || ||| ||||||| Sbjct 878099 GCATGTATTAGCTCTAGAGTTATTACAGTTATCCATCTAACG-GGCACGATCCAATAAAC 878157 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 ||| ||||||||||||||||||||| || |||| |||| | || | ||| |||||| Sbjct 878158 CATAGCTGATTTAATGAGCCATTCGCGGTCTCACCGTATTAAGGCCTGA-ACTGAGACAT 878216 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| ||||||||||||||| Sbjct 878217 GCATGGCTTAATCTTTGAGACAAGCCTATGACTACTGGCAG 878257 >seq592 Length=12611 Score = 75.2 bits (82), Expect = 3e-11 Identities = 82/107 (77%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACA-AGACCC--AAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| ||||| || | | | | ||| || | || ||| || | ||||| ||| Sbjct 9755 ACTCATTCCGATTACGGAGCCTCTTAGAGGAGTCCCGCATAGGTAGTTTTCGTCACCACC 9696 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG 106 ||||| || |||| |||||||||||||||||||||| || || ||| Sbjct 9695 TCCCCATGCTGGGAGTGGGTAATTTGCGCGCCTGCTGTCTGCCCTGG 9649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510385545472