Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq948 235 4e-57 seq953 109 4e-19 >seq948 Length=1705571 Score = 235 bits (260), Expect = 4e-57 Identities = 525/777 (68%), Gaps = 17/777 (2%) Strand=Plus/Plus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 |||||||| | ||||| || | |||||| | ||| | || |||||| | ||||| Sbjct 191330 AATCCTCGAAGATTCGTTGTGATGCCCATCCAATATCATGACATTTGGGAGTTTTACAAG 191389 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 || || | || ||||| ||||| || ||||| ||||||||| | || ||| | | ||| Sbjct 191390 AAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGAT 191449 Query 61165 TGGGA--GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||||| || || || || || |||| |||||||| |||| ||||| || |||| Sbjct 191450 TGGGAAGGCCTTAAT-GAT-GGCGAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTG 191507 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCA 61280 | || || || ||||| ||||| ||| || || |||| ||| | || || || Sbjct 191508 CAGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAACTTTTGTAAC--GAAGTCCA 191565 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340 | | | ||||| |||||||| ||||| | || | ||| | || || |||| || || Sbjct 191566 AATTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATCCATTCCGA 191625 Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400 |||||| | |||| || ||||| ||||| | ||| | | |||||| || ||||| Sbjct 191626 AATGTACTCTCTTCTGATTGATACCTACATTAAGGATCCAGTGGAACGCGACTTTTTGTT 191685 Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGG 61458 || ||| | ||||| | || ||| || |||||| |||||||| | | ||| Sbjct 191686 TAACGCCGTTCAGACGCTGCCAT--GTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 191743 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 || | | || | |||| ||| | || || | ||||||| || | || || || Sbjct 191744 ATTGCAAATAGGAAGGCTCCATACGCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGC 191803 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 || || || ||| || ||||| | ||||||||| | ||||| || || || ||||| Sbjct 191804 GTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCA 191863 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637 || || ||||||||||| |||||||| || || || ||| | || || ||||| Sbjct 191864 GGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGACTTTGCA 191923 Query 61638 TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 || || | || |||| || | || || || ||| || | || ||| || Sbjct 191924 TGCCTT-ATTTTTAAAC---ATATTGTCAACAAACCTACGGCAGAAAGAGTTTATGACAT 191979 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 | | | |||||||| | || ||| |||||||| || ||||| || || ||| || Sbjct 191980 TATGAGGGAGGCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGTCAATCT 192039 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 || |||||||||||| | ||||||| || || || ||||||||||| || || Sbjct 192040 TATTGGCATGAATTGTCGCCTAATGTGCCAATACATAAGGTTTGTTGCCGATCGGCT 192096 >seq953 Length=2188470 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 |||| || || ||||||| || || || | || |||||||| |||| ||| | | Sbjct 252282 CCACGAATTTAGGAAGGGAAATGGAAGCCAAATTACAGACAGCAGTCTCTGTAGGCGAGC 252223 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | |||||||||||||| ||||| ||||| ||| |||||| || | | || |||| Sbjct 252222 TGTACTCGACAATTTCAGTGCAAAGATTTGAGCACTTTATGGTCCCTAGGTGTTGCTGAT 252163 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | ||||||||||| | ||||||||||| ||| ||||| |||| || |||| ||| Sbjct 252162 TGGATTTGCGATTGCAAGAATCCTTGTACAACATAAACGGATTGCCCGTTTCAATTTGAC 252103 Query 66171 ACTCAATGAT 66180 |||||||| Sbjct 252102 TTTCAATGAT 252093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563362990480