Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1214 143 5e-32 seq395 143 5e-32 seq3 143 5e-32 seq1213 127 4e-27 seq1025 118 2e-24 seq208 118 2e-24 >seq1214 Length=6203119 Score = 143 bits (158), Expect = 5e-32 Identities = 207/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| | ||||||| ||| | || || ||||||||||| ||||| ||||| Sbjct 6032722 ATGCCCTTGATTGGGTGTCTGCGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 6032781 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||| |||||| |||| | | | || |||||||||||| ||| ||||| | ||| Sbjct 6032782 TCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTGCATGGAATAATGGAAGAGGACTT-CGG 6032840 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || |||||| || Sbjct 6032841 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGGCGTT 6032899 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | ||||||||||||| |||| |||| ||||| ||||| || Sbjct 6032900 TGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAGGC 6032959 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 6032960 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 6033003 Score = 143 bits (158), Expect = 5e-32 Identities = 207/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| | ||||||| ||| | || || ||||||||||| ||||| ||||| Sbjct 6141636 ATGCCCTTGATTGGGTGTCTGCGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 6141695 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||| |||||| |||| | | | || |||||||||||| ||| ||||| | ||| Sbjct 6141696 TCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTGCATGGAATAATGGAAGAGGACTT-CGG 6141754 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || |||||| || Sbjct 6141755 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGGCGTT 6141813 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | ||||||||||||| |||| |||| ||||| ||||| || Sbjct 6141814 TGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAGGC 6141873 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 6141874 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 6141917 >seq395 Length=6286 Score = 143 bits (158), Expect = 5e-32 Identities = 207/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| | ||||||| ||| | || || ||||||||||| ||||| ||||| Sbjct 3355 ATGCCCTTGATTGGGTGTCTGCGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 3296 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||| |||||| |||| | | | || |||||||||||| ||| ||||| | ||| Sbjct 3295 TCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTGCATGGAATAATGGAAGAGGACTT-CGG 3237 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || |||||| || Sbjct 3236 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGGCGTT 3178 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | ||||||||||||| |||| |||| ||||| ||||| || Sbjct 3177 TGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAGGC 3118 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 3117 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 3074 Score = 113 bits (124), Expect = 8e-23 Identities = 156/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 86 AAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAA 142 ||||| ||||| |||| |||||| |||| | | | || |||||||||||| ||| Sbjct 4100 AAATTTGAGTGCTCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTGCATGGAATAATGGAA 4041 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATA 201 ||||| | ||||||||||| |||||||| | ||| ||| |||||||| || || || | Sbjct 4040 GAGGACTT-CGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACA 3983 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | |||||| || |||| | ||||||||||||| |||| |||| ||| Sbjct 3982 GGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAAC 3923 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 || ||||| || ||| |||| ||||||||||| Sbjct 3922 TAAAGCGAAGGCATTCGTCAAGCATGTTTTCATT 3889 >seq3 Length=50134 Score = 143 bits (158), Expect = 5e-32 Identities = 207/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| | ||||||| ||| | || || ||||||||||| ||||| ||||| Sbjct 2597 ATGCCCTTGATTGGGTGTCTGCGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 2538 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||| |||||| |||| | | | || |||||||||||| ||| ||||| | ||| Sbjct 2537 TCAAGTCAGGCCGGTGTTGCCTGCAGAGTTTTGCATGGAATAATGGAAGAGGACTT-CGG 2479 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || |||||| || Sbjct 2478 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGGCGTT 2420 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | ||||||||||||| |||| |||| ||||| ||||| || Sbjct 2419 TGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAGGC 2360 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 2359 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 2316 >seq1213 Length=7437389 Score = 127 bits (140), Expect = 4e-27 Identities = 201/282 (71%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| | ||||||| ||| | || || ||||||||||| ||||| ||||| Sbjct 2204775 ATGCCCTTGATTGGGTGTCTGCGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 2204716 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||| |||||| |||| | | | || |||||||||||| ||| ||||| | ||| Sbjct 2204715 TCAAGTCAGGCCGATGTTGCCTGCAAAGTTTTGCATGGAATAATGGAAGAGGACTT-CGG 2204657 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||| ||||||||| | ||| | |||||| | || || || |||||| || Sbjct 2204656 TTCTATTTCGTTGGTTTCCGGATCCGAAGCAATGATCGAGAGAGACAGGCGGGGGCGTTT 2204597 Query 215 GTATTCAATTGTCAGAG-GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | |||| |||||||| ||||| |||| ||||| ||||| || Sbjct 2204596 GTATGGCTGCGCTAGAGAATGAAATTCATGGATCGTAGCCAGACAAACTAAAGCGAAGGC 2204537 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 ||| |||| ||||||||||| || ||| ||||||| || Sbjct 2204536 CTTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAG 2204496 >seq1025 Length=4019 Score = 118 bits (130), Expect = 2e-24 Identities = 172/237 (73%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 86 AAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAA 142 ||||| ||||| |||| |||||| |||| | | | || |||||||||||| ||| Sbjct 3667 AAATTTGAGTGCTCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTGCATGGAATAATGGAA 3608 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATA 201 ||||| | ||||||||||| |||||||| | ||| ||| |||||||| || || || | Sbjct 3607 GAGGACTT-CGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACA 3550 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | |||||| || |||| | ||||||||||||| |||| |||| ||| Sbjct 3549 GGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAAC 3490 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| || ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 3489 TAAAGCGAAGGCATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 3434 >seq208 Length=41862 Score = 118 bits (130), Expect = 2e-24 Identities = 172/237 (73%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 86 AAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAA 142 ||||| ||||| |||| |||||| |||| | | | || |||||||||||| ||| Sbjct 30033 AAATTTGAGTGCTCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTGCATGGAATAATGGAA 29974 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATA 201 ||||| | ||||||||||| |||||||| | ||| ||| |||||||| || || || | Sbjct 29973 GAGGACTT-CGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACA 29916 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | |||||| || |||| | ||||||||||||| |||| |||| ||| Sbjct 29915 GGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAAC 29856 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| || ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 29855 TAAAGCGAAGGCATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 29800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915188862016