Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1213 165 3e-38 seq1214 161 4e-37 seq1210 161 4e-37 seq402 161 4e-37 seq381 161 4e-37 seq280 161 4e-37 seq208 161 4e-37 seq1211 147 9e-33 seq1215 140 1e-30 seq858 120 1e-24 seq597 120 1e-24 seq532 120 1e-24 seq245 120 1e-24 seq612 95.1 5e-17 >seq1213 Length=7437389 Score = 165 bits (182), Expect = 3e-38 Identities = 114/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 5205353 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 5205294 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| |||||||||||||||||||||||||| ||||| Sbjct 5205293 GAAACTCTGGTGGAGGACCGTAGCGATTCTGGCGTGCAAATCGATCGTCAAACCGGGGTA 5205234 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 5205233 TAGGGGCGA 5205225 Score = 165 bits (182), Expect = 3e-38 Identities = 114/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 5291453 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 5291512 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| |||||||||||||||||||||||||| ||||| Sbjct 5291513 GAAACTCTGGTGGAGGACCGTAGCGATTCTGGCGTGCAAATCGATCGTCAAACCGGGGTA 5291572 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 5291573 TAGGGGCGA 5291581 >seq1214 Length=6203119 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 6037031 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 6037090 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| || ||| Sbjct 6037091 GAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTA 6037150 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 6037151 TAGGGGCGA 6037159 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 6145948 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 6146007 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| || ||| Sbjct 6146008 GAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTA 6146067 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 6146068 TAGGGGCGA 6146076 >seq1210 Length=13762452 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 8091982 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 8091923 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| || ||| Sbjct 8091922 GAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTA 8091863 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 8091862 TAGGGGCGA 8091854 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 9900988 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 9901047 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| || ||| Sbjct 9901048 GAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTA 9901107 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 9901108 TAGGGGCGA 9901116 Score = 75.2 bits (82), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 406 GGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT---C 462 ||||||||||| ||||||||||||||||| |||||| | ||||||| |||||| | Sbjct 8092276 GGCCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTGTGCGAGTCAAAGGGTGTGCGC 8092217 Query 463 AAA--CCCGTGCGCGTAATGAAAGTGAA 488 || |||| | ||||| |||||||||| Sbjct 8092216 GAAGCCCCGAG-GCGTAGTGAAAGTGAA 8092190 >seq402 Length=1867 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 1537 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 1596 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| || ||| Sbjct 1597 GAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTA 1656 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 1657 TAGGGGCGA 1665 >seq381 Length=24879 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 10374 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 10433 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| || ||| Sbjct 10434 GAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTA 10493 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 10494 TAGGGGCGA 10502 >seq280 Length=5146 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 428 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 369 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| || ||| Sbjct 368 GAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTA 309 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 308 TAGGGGCGA 300 >seq208 Length=41862 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||| Sbjct 25782 GAGCATGCATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAGCCAGAG 25723 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| || ||| Sbjct 25722 GAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTA 25663 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 25662 TAGGGGCGA 25654 >seq1211 Length=11859842 Score = 147 bits (162), Expect = 9e-33 Identities = 110/129 (85%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| || || | |||||||||| ||||||||||| || |||| |||| |||||| Sbjct 5040349 GAGCATGCATGATGAGCCCCGAAAGATTGTGAACTATGCTTGCGTAGGTTGAAACCAGAG 5040408 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||||||||||||||||||| |||| |||||| Sbjct 5040409 GAAACTCTGGTGGAGGACCGTAGCGATTCTGGCGTGCAAATCGATCGCCAAACGTGGGTA 5040468 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 5040469 TAGGGGCGA 5040477 Score = 147 bits (162), Expect = 9e-33 Identities = 110/129 (85%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| || || | |||||||||| ||||||||||| || |||| |||| |||||| Sbjct 5083278 GAGCATGCATGATGAGCCCCGAAAGATTGTGAACTATGCTTGCGTAGGTTGAAACCAGAG 5083219 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||||||||||||||||||| |||| |||||| Sbjct 5083218 GAAACTCTGGTGGAGGACCGTAGCGATTCTGGCGTGCAAATCGATCGCCAAACGTGGGTA 5083159 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 5083158 TAGGGGCGA 5083150 >seq1215 Length=4267853 Score = 140 bits (154), Expect = 1e-30 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||| || ||||||| ||||||||||||| || |||| ||||||||||||||||||| Sbjct 957347 TGTTGAGATCCGAAAGGTGGTGAACTATGCTTGCGTAGGTCGAAGCCAGAGGAAACTCTG 957406 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | |||| ||||| |||||||||||||||||||| || |||||||||||| Sbjct 957407 GTGGAGGACCATAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTATAGGGGCGA 957466 >seq858 Length=23843 Score = 120 bits (132), Expect = 1e-24 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||||| || |||| ||||||||||||||||||||||||||| || |||| ||||| | Sbjct 17320 CTATGCTTGCGTAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGAC 17261 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||| || |||||||||||| Sbjct 17260 GTGCAAATCGATCGTCAAACGTGAGTATAGGGGCGA 17225 >seq597 Length=45338 Score = 120 bits (132), Expect = 1e-24 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||||| || |||| ||||||||||||||||||||||||||| || |||| ||||| | Sbjct 8330 CTATGCTTGCGTAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGAC 8271 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||| || |||||||||||| Sbjct 8270 GTGCAAATCGATCGTCAAACGTGAGTATAGGGGCGA 8235 >seq532 Length=10363 Score = 120 bits (132), Expect = 1e-24 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||||| || |||| ||||||||||||||||||||||||||| || |||| ||||| | Sbjct 3673 CTATGCTTGCGTAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGAC 3614 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||| || |||||||||||| Sbjct 3613 GTGCAAATCGATCGTCAAACGTGAGTATAGGGGCGA 3578 >seq245 Length=9392 Score = 120 bits (132), Expect = 1e-24 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||||| || |||| ||||||||||||||||||||||||||| || |||| ||||| | Sbjct 6918 CTATGCTTGCGTAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGAC 6859 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||| || |||||||||||| Sbjct 6858 GTGCAAATCGATCGTCAAACGTGAGTATAGGGGCGA 6823 >seq612 Length=2605 Score = 95.1 bits (104), Expect = 5e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 572 CCCGAAAGA-TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG-GAAACTCTGGTGGAG 629 ||||||||| |||||| |||||| || ||| |||||||||| || ||| |||||||| Sbjct 301 CCCGAAAGAGTGGTGAGCTATGCTTGCGTAGCAAGAAGCCAGAGAGACACTATGGTGGAG 360 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || |||| ||| | || |||||||||||||||| | |||||||||||| Sbjct 361 GACCGTAGCGATTCGGACGCACAAATCGATCGTCAAACGGGAGTATAGGGGCGA 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079973895350