Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1214 161 2e-37 seq1025 161 2e-37 seq395 161 2e-37 seq208 161 2e-37 seq3 161 2e-37 seq1213 136 6e-30 seq381 102 1e-19 seq205 102 1e-19 seq1217 93.3 7e-17 seq1211 86.0 1e-14 >seq1214 Length=6203119 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 6033370 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 6033311 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 6033310 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTCTCAATCTGTC 6033254 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 6142284 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 6142225 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 6142224 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTCTCAATCTGTC 6142168 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 6033693 ACTCGTTGACACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 6033634 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 6033633 CCTGTTATTGC 6033623 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 6142607 ACTCGTTGACACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 6142548 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 6142547 CCTGTTATTGC 6142537 >seq1025 Length=4019 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 3067 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 3126 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 3127 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTCTCAATCTGTC 3183 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 2749 ACTCGTTGACACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 2808 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 2809 CCTGTTATTGC 2819 >seq395 Length=6286 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 2707 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 2766 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 2767 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTCTCAATCTGTC 2823 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 2384 ACTCGTTGACACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 2443 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 2444 CCTGTTATTGC 2454 >seq208 Length=41862 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 29433 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 29492 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 29493 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTCTCAATCTGTC 29549 >seq3 Length=50134 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1949 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 2008 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 2009 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTCTCAATCTGTC 2065 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 1626 ACTCGTTGACACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 1685 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 1686 CCTGTTATTGC 1696 >seq1213 Length=7437389 Score = 136 bits (150), Expect = 6e-30 Identities = 90/100 (90%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2204143 GTCTCCTTTGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 2204202 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||| ||| ||||||||||| |||| ||||| Sbjct 2204203 ACCACCAACCACCAAATTAAGAAAGAGCTCTCAACCTGTC 2204242 Score = 93.3 bits (102), Expect = 7e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| |||||||||||||||||| | |||||||||||||||||||| Sbjct 2203889 ACTCGTTGACACCGTCATTGTAGCGCGCGTGCGGCCTCGGACATCTAAGGGCATCACAGA 2203948 Query 62 CCTGTTATTGC 72 || |||||||| Sbjct 2203949 CCCGTTATTGC 2203959 >seq381 Length=24879 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 7045 ACTCGTTGACACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 6986 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 6985 CCTGTTATTGC 6975 >seq205 Length=7450 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 3232 ACTCGTTGACACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 3291 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 3292 CCTGTTATTGC 3302 >seq1217 Length=794059 Score = 93.3 bits (102), Expect = 7e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||| |||||||| ||||||| || | |||||||||||||||||||| Sbjct 60992 ACTCGTTGACACCGTCATTGTAGCGCACGTGCGGACCCGGACATCTAAGGGCATCACAGA 61051 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 61052 CCTGTTATTGC 61062 >seq1211 Length=11859842 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 5050896 CCGTCATTGTAGCGCGCGTGCGGCCCCTGATATCTAAGGGCATCACAGACCTGTTATTGC 5050955 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 5072731 CCGTCATTGTAGCGCGCGTGCGGCCCCTGATATCTAAGGGCATCACAGACCTGTTATTGC 5072672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796790605977