Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1214 102 5e-20 seq1025 102 5e-20 seq395 102 5e-20 seq381 102 5e-20 seq280 102 5e-20 seq208 102 5e-20 seq205 102 5e-20 seq3 102 5e-20 seq1210 96.9 2e-18 seq1217 84.2 1e-14 seq1213 75.2 7e-12 >seq1214 Length=6203119 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 6033880 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 6033823 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 6033822 GTAAT-CAGCGCAAGCT 6033807 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 6142794 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 6142737 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 6142736 GTAAT-CAGCGCAAGCT 6142721 >seq1025 Length=4019 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2562 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 2619 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 2620 GTAAT-CAGCGCAAGCT 2635 >seq395 Length=6286 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2197 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 2254 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 2255 GTAAT-CAGCGCAAGCT 2270 >seq381 Length=24879 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 7232 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 7175 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 7174 GTAAT-CAGCGCAAGCT 7159 >seq280 Length=5146 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 3562 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 3619 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 3620 GTAAT-CAGCGCAAGCT 3635 >seq208 Length=41862 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 28939 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 28996 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 28997 GTAAT-CAGCGCAAGCT 29012 >seq205 Length=7450 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 3045 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 3102 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 3103 GTAAT-CAGCGCAAGCT 3118 >seq3 Length=50134 Score = 102 bits (112), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1439 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 1496 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 1497 GTAAT-CAGCGCAAGCT 1512 >seq1210 Length=13762452 Score = 96.9 bits (106), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || ||||||||| |||||||| || ||||||||||||||||||| Sbjct 9897884 TCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGTGGTGTGTACAAAGGGCAGGGAC 9897827 Query 108 GTAATACAACGCAAGCT 124 ||||| || |||||||| Sbjct 9897826 GTAAT-CAGCGCAAGCT 9897811 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || || || ||||| || ||||| ||| ||||||||||| |||||||||||||||| ||| Sbjct 8094906 CTTACCAAACCATT-CAATCGGTGGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGAACG 8094963 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 8094964 TAAT-CAGCGCAAGCT 8094978 >seq1217 Length=794059 Score = 84.2 bits (92), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 |||||||||||||| || ||||||||| ||||||| ||| |||||||||||||| |||| Sbjct 60805 TCTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGACGGTGTGTACAAAGGGCAAGGAC 60862 Query 108 GTAATACAACGCAAGCT 124 ||||| || ||||||| Sbjct 60863 GTAAT-CAGTGCAAGCT 60878 >seq1213 Length=7437389 Score = 75.2 bits (82), Expect = 7e-12 Identities = 54/60 (90%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||||| |||| |||||| |||||||||||||||||||||||| || ||||| Sbjct 2203761 TTCAATCGGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAGCGCAA 2203818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300796568060