Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1214 84.2 2e-14 seq395 84.2 2e-14 seq3 84.2 2e-14 >seq1214 Length=6203119 Score = 84.2 bits (92), Expect = 2e-14 Identities = 128/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | |||| |||||| |||| | | | || Sbjct 6032755 ACGTTTACTTTGAACAAATTTGAGTGCTCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTG 6032814 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||| ||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 6032815 CATGGAATAATGGAAGAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 6032872 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || |||||| || |||| | | ||||||||||| |||| Sbjct 6032873 TGATCAAAAGAGACAGGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGA 6032931 Score = 84.2 bits (92), Expect = 2e-14 Identities = 128/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | |||| |||||| |||| | | | || Sbjct 6141669 ACGTTTACTTTGAACAAATTTGAGTGCTCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTG 6141728 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||| ||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 6141729 CATGGAATAATGGAAGAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 6141786 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || |||||| || |||| | | ||||||||||| |||| Sbjct 6141787 TGATCAAAAGAGACAGGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGA 6141845 >seq395 Length=6286 Score = 84.2 bits (92), Expect = 2e-14 Identities = 128/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | |||| |||||| |||| | | | || Sbjct 3322 ACGTTTACTTTGAACAAATTTGAGTGCTCAAGTCAGGCCGATGTTGCCTGCAGAGTTTTG 3263 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||| ||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 3262 CATGGAATAATGGAAGAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 3205 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || |||||| || |||| | | ||||||||||| |||| Sbjct 3204 TGATCAAAAGAGACAGGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGA 3146 >seq3 Length=50134 Score = 84.2 bits (92), Expect = 2e-14 Identities = 128/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | |||| |||||| |||| | | | || Sbjct 2564 ACGTTTACTTTGAACAAATTTGAGTGCTCAAGTCAGGCCGGTGTTGCCTGCAGAGTTTTG 2505 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||| ||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 2504 CATGGAATAATGGAAGAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 2447 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || |||||| || |||| | | ||||||||||| |||| Sbjct 2446 TGATCAAAAGAGACAGGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGA 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511993963680