Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1217 82.4 1e-13 seq1214 82.4 1e-13 seq1209 82.4 1e-13 seq1150 82.4 1e-13 seq1112 82.4 1e-13 seq673 82.4 1e-13 seq597 82.4 1e-13 seq532 82.4 1e-13 seq528 82.4 1e-13 seq381 82.4 1e-13 seq62 82.4 1e-13 seq1212 77.0 5e-12 seq208 77.0 5e-12 seq1210 73.4 6e-11 >seq1217 Length=794059 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 62689 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCATGTGCCTGGTCGATCGGCCAAT 62746 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 62747 GGTGCGAGGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCATCCA 62806 Query 121 GA 122 || Sbjct 62807 GA 62808 >seq1214 Length=6203119 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 6039852 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 6039909 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 6039910 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 6039969 Query 121 GA 122 || Sbjct 6039970 GA 6039971 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 6148758 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 6148815 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 6148816 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 6148875 Query 121 GA 122 || Sbjct 6148876 GA 6148877 >seq1209 Length=14622995 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 11990730 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 11990787 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 11990788 GGTGCGAGGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCATCCA 11990847 Query 121 GA 122 || Sbjct 11990848 GA 11990849 Score = 73.4 bits (80), Expect = 6e-11 Identities = 93/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| | |||| | |||||| | ||||| || | ||| || | | || | Sbjct 14434755 GTACGAGAGAAGCCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 14434812 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAG-AATCCATGCC 119 | |||| ||||||||||| |||||| | ||||||||||||||||| | ||||||| || Sbjct 14434813 GGTGCGAGGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAAATCCAT-CC 14434871 Query 120 AGA 122 ||| Sbjct 14434872 AGA 14434874 >seq1150 Length=7614 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 5914 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 5857 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 5856 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 5797 Query 121 GA 122 || Sbjct 5796 GA 5795 >seq1112 Length=4721 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 2658 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 2601 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 2600 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 2541 Query 121 GA 122 || Sbjct 2540 GA 2539 >seq673 Length=2341 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 1996 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 1939 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 1938 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 1879 Query 121 GA 122 || Sbjct 1878 GA 1877 >seq597 Length=45338 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 5541 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 5484 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 5483 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 5424 Query 121 GA 122 || Sbjct 5423 GA 5422 >seq532 Length=10363 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 908 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 851 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 850 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 791 Query 121 GA 122 || Sbjct 790 GA 789 >seq528 Length=7863 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 5165 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 5108 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 5107 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 5048 Query 121 GA 122 || Sbjct 5047 GA 5046 >seq381 Length=24879 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 13194 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 13251 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 13252 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 13311 Query 121 GA 122 || Sbjct 13312 GA 13313 >seq62 Length=2832 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 234 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 291 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 292 GGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 351 Query 121 GA 122 || Sbjct 352 GA 353 >seq1212 Length=7212195 Score = 77.0 bits (84), Expect = 5e-12 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCT-GTCTGACCAGGCAG 59 ||||||||||||| || | |||||| | ||||| || | || ||| || | | || Sbjct 762427 GTACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTACATGTGCCTAGTC-GATCGGTCAA 762371 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 || |||| ||||||||||| |||||| | ||||||||||||||||| |||||| || Sbjct 762370 TGGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCC 762311 Query 120 AGA 122 ||| Sbjct 762310 AGA 762308 >seq208 Length=41862 Score = 77.0 bits (84), Expect = 5e-12 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCT-GTCTGACCAGGCAG 59 ||||||||||||| || | |||||| | ||||| || | || ||| || | | || Sbjct 22960 GTACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTACATGTGCCTAGTC-GATCGGTCAA 22904 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 || |||| ||||||||||| |||||| | ||||||||||||||||| |||||| || Sbjct 22903 TGGTGCGAGGCTACCATCTGGGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCC 22844 Query 120 AGA 122 ||| Sbjct 22843 AGA 22841 >seq1210 Length=13762452 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 8089253 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGATCGGCCAAT 8089196 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| | ||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 8089195 GGTGCGGGGGTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 8089136 Query 121 GA 122 || Sbjct 8089135 GA 8089134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819190341888