Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1209 217 1e-51 seq1207 113 4e-20 >seq1209 Length=14622995 Score = 217 bits (240), Expect = 1e-51 Identities = 521/777 (67%), Gaps = 17/777 (2%) Strand=Plus/Plus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 |||||||| | || || || | |||||| | ||| | || || ||| | ||||| Sbjct 7446008 AATCCTCGAAGATTTGTTGTGATGCCCATCCAATATCATGACATCTGGGAGTTTTACAAG 7446067 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 || || | || ||||| ||||| || ||||| ||||||||| | || ||| | | ||| Sbjct 7446068 AAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGAT 7446127 Query 61165 TGGGA--GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||||| || || || || || |||| |||||||| |||| ||||| || |||| Sbjct 7446128 TGGGAAGGCCTTAAT-GAT-GGCGAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTG 7446185 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCA 61280 | || || || ||||| ||||| || || || |||| ||| | || || || Sbjct 7446186 CAGCCAGTGATGGCATCGTTAATGAAAACCTAACTTTGAACTTTTGTAAC--GAAGTCCA 7446243 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340 | | | ||||| |||||||| ||||| | || | ||| | || || | || || || Sbjct 7446244 AATTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGA 7446303 Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400 |||||| | |||| || ||||| ||||| | ||| | | |||||| || ||||| Sbjct 7446304 AATGTACTCTCTTCTGATTGATACCTACATTAAGGATCCAGTGGAACGCGACTTTTTGTT 7446363 Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGG 61458 || ||| | ||||| | || ||| || |||||| |||||||| | | ||| Sbjct 7446364 TAACGCCGTTCAGACGCTGCCAT--GTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 7446421 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 || | | || | || ||| | ||| || | ||||||| || | || || || Sbjct 7446422 ATTGCAAATAGGAAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGC 7446481 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 || || || ||| || ||||| | ||||||||| | ||||| ||||| || ||||| Sbjct 7446482 GTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCA 7446541 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637 || || ||||||||||| |||||||| || || || ||| | || |||||||| Sbjct 7446542 GGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTTGCA 7446601 Query 61638 TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 || || | || |||| || | || || || ||| | | || ||| || Sbjct 7446602 TGCCTT-ATTTTTAAAC---ATATTGTCAACAAACCTACGGCAGCAAGAGTTTATGACAT 7446657 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 | | | |||||||| | || ||| |||||||| || ||||| || || ||| || Sbjct 7446658 TATGAGGGAGGCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGTCAATCT 7446717 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 || |||||||||||| | ||||||| || || || ||||||||||| || || Sbjct 7446718 TATTGGCATGAATTGTCGCCTAATGTGCCAATACATAAGGTTTGTTGCCGATCGGCT 7446774 >seq1207 Length=20116479 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||| || ||||||| || || || | || |||||||| |||| ||| | | Sbjct 7939649 CCACAAATTTAGGAAGGGAAATGGAAGCCAAATTACAGACAGCAGTCTCTGTAGGCGAGC 7939590 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | |||||||||||||| ||||| ||||| ||| |||||| || | | || |||| Sbjct 7939589 TGTACTCGACAATTTCAGTGCAAAGATTTGAGCACTTTATGGTCCCTAGGTGTTGCTGAT 7939530 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | ||||||||||| | ||||||||||| ||| ||||| |||| || |||| ||| Sbjct 7939529 TGGATTTGCGATTGCAAGAATCCTTGTACAACATAAACGGATTGCCCGTTTCAATTTGAT 7939470 Query 66171 ACTCAATGAT 66180 |||||||| Sbjct 7939469 TTTCAATGAT 7939460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562103196880