Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 217 1e-51
seq1207 113 4e-20
>seq1209
Length=14622995
Score = 217 bits (240), Expect = 1e-51
Identities = 521/777 (67%), Gaps = 17/777 (2%)
Strand=Plus/Plus
Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104
|||||||| | || || || | |||||| | ||| | || || ||| | |||||
Sbjct 7446008 AATCCTCGAAGATTTGTTGTGATGCCCATCCAATATCATGACATCTGGGAGTTTTACAAG 7446067
Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164
|| || | || ||||| ||||| || ||||| ||||||||| | || ||| | | |||
Sbjct 7446068 AAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGAT 7446127
Query 61165 TGGGA--GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222
||||| || || || || || |||| |||||||| |||| ||||| || ||||
Sbjct 7446128 TGGGAAGGCCTTAAT-GAT-GGCGAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTG 7446185
Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCA 61280
| || || || ||||| ||||| || || || |||| ||| | || || ||
Sbjct 7446186 CAGCCAGTGATGGCATCGTTAATGAAAACCTAACTTTGAACTTTTGTAAC--GAAGTCCA 7446243
Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340
| | | ||||| |||||||| ||||| | || | ||| | || || | || || ||
Sbjct 7446244 AATTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGA 7446303
Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400
|||||| | |||| || ||||| ||||| | ||| | | |||||| || |||||
Sbjct 7446304 AATGTACTCTCTTCTGATTGATACCTACATTAAGGATCCAGTGGAACGCGACTTTTTGTT 7446363
Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGG 61458
|| ||| | ||||| | || ||| || |||||| |||||||| | | |||
Sbjct 7446364 TAACGCCGTTCAGACGCTGCCAT--GTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 7446421
Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518
|| | | || | || ||| | ||| || | ||||||| || | || || ||
Sbjct 7446422 ATTGCAAATAGGAAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGC 7446481
Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578
|| || || ||| || ||||| | ||||||||| | ||||| ||||| || |||||
Sbjct 7446482 GTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCA 7446541
Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637
|| || ||||||||||| |||||||| || || || ||| | || ||||||||
Sbjct 7446542 GGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTTGCA 7446601
Query 61638 TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697
|| || | || |||| || | || || || ||| | | || ||| ||
Sbjct 7446602 TGCCTT-ATTTTTAAAC---ATATTGTCAACAAACCTACGGCAGCAAGAGTTTATGACAT 7446657
Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757
| | | |||||||| | || ||| |||||||| || ||||| || || ||| ||
Sbjct 7446658 TATGAGGGAGGCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGTCAATCT 7446717
Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814
|| |||||||||||| | ||||||| || || || ||||||||||| || ||
Sbjct 7446718 TATTGGCATGAATTGTCGCCTAATGTGCCAATACATAAGGTTTGTTGCCGATCGGCT 7446774
>seq1207
Length=20116479
Score = 113 bits (124), Expect = 4e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050
||||||| || ||||||| || || || | || |||||||| |||| ||| | |
Sbjct 7939649 CCACAAATTTAGGAAGGGAAATGGAAGCCAAATTACAGACAGCAGTCTCTGTAGGCGAGC 7939590
Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110
| |||||||||||||| ||||| ||||| ||| |||||| || | | || ||||
Sbjct 7939589 TGTACTCGACAATTTCAGTGCAAAGATTTGAGCACTTTATGGTCCCTAGGTGTTGCTGAT 7939530
Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170
| ||||||||||| | ||||||||||| ||| ||||| |||| || |||| |||
Sbjct 7939529 TGGATTTGCGATTGCAAGAATCCTTGTACAACATAAACGGATTGCCCGTTTCAATTTGAT 7939470
Query 66171 ACTCAATGAT 66180
||||||||
Sbjct 7939469 TTTCAATGAT 7939460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397562103196880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |