Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq16895 122 1e-25 seq6250 111 2e-22 seq276 86.0 9e-15 >seq16895 Length=13874 Score = 122 bits (134), Expect = 1e-25 Identities = 169/227 (74%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||| |||||| ||| | | ||||| |||||| | ||||| ||||||| | Sbjct 588 GTAAAAAGGGCACAGACGTAATCAGCACAAGCTT-ATGACTTACCCTTACCAGGAATT-C 645 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 ||||| | | ||||||||||| | || | ||| ||| | | |||| | Sbjct 646 TTCGTTCACGGGGAACAATTGCAAGCCCCGATAACAGTCATGACGGTTATGATTCA--GT 703 Query 118 TTACCCGGACCTG-TC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||| ||||| || ||||| | | | ||||| |||| | ||| |||||||| || Sbjct 704 TTACCCA-ACCTGATCAGGCCAGGATTCCAAACTCGCTGAAACCGTCATTGTAGCGCACG 762 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||| | |||||||||||||||||||||| |||||| |||||| Sbjct 763 TGCGGCCCCGGACATCTAAGGGCATCACAGACCAGTTATT-CCTCAA 808 >seq6250 Length=31870 Score = 111 bits (122), Expect = 2e-22 Identities = 165/225 (73%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||| ||| ||| | | ||||| || ||| || ||||| ||||||| | Sbjct 20575 GTACAAAGAGCAGGGAAGTAATCAGCACAAGCTT-ATCACTTGCACTTACCAGGAATT-C 20518 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| | | |||| || ||| | | || | |||||| | ||| || || Sbjct 20517 CTCGTTCACGGAGAACAGTTACAAGAACCGATTTCAGTCACGACGGTTATTATTCAGTTT 20458 Query 120 ACCCGGACCTG-TC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 || | |||| || ||||| | | ||||| |||| | ||| |||||||| |||| Sbjct 20457 ACTCA-ACCTACTCAGGCCAGCATTCCAAACTCGCTGAAACCGTCATTGTAGCGCACGTG 20399 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | | |||||||||||||||||||||||||||| | ||||| Sbjct 20398 CGGCTCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAA 20355 >seq276 Length=129665 Score = 86.0 bits (94), Expect = 9e-15 Identities = 152/212 (72%), Gaps = 11/212 (5%) Strand=Plus/Plus Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75 ||||| || ||| |||||| ||| | |||||||| ||||||| ||||||| | | || Sbjct 73638 ACGTAATCTGCGCAAGCTTG-TGAATTGCGCTTACCAGGAATT-CCTCGTTCACGGGGAA 73695 Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATT---TCAAAGATTACCCGGACCTG-T 131 || |||||| | | |||| |||| | | || |||| |||||| ||||| | Sbjct 73696 CATTTGCAAGCACCATTCCCAGTCACAAAGGTTTTAATTCAAT--TTACCCA-ACCTGCT 73752 Query 132 C-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190 | ||||| | | | ||||| |||| | ||| ||| | || ||||| ||| | |||| Sbjct 73753 CAGGCCAGGATTCCAAACTCGCTGAAACCGTCATTGTGGTGCACGTGCTACCCCGGACAT 73812 Query 191 CTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||||||| || || ||||||| ||||| Sbjct 73813 CTAAGGGCATCTCAAACACGTTATTG-CTCAA 73843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751372885345