Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3124 199 7e-49 seq9378 89.7 9e-16 >seq3124 Length=47935 Score = 199 bits (220), Expect = 7e-49 Identities = 201/255 (79%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACAT 124 ||| || ||||||||||| ||||| ||||| |||||||||||||||| | ||| | Sbjct 1173 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 1232 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCG 183 | |||||||||||| ||||||||| | |||||||||||||||||||| | ||| ||| | Sbjct 1233 TTGCATGGAATAATGGAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 1290 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||| |||| ||||| || |||||| | |||| ||| |||||||||||||||| Sbjct 1291 TAATGGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTG 1350 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| |||| |||||| |||||||| || ||||||||||||||||| ||| || Sbjct 1351 GATCGCCGCCAGACAAACTACAGCGAAAGCATTTGCCAAGGATGTTTTCATTGATC-TTG 1409 Query 304 AACGAAAGTTAGGGG 318 | ||||||| || || Sbjct 1410 AGCGAAAGTCAGAGG 1424 >seq9378 Length=23531 Score = 89.7 bits (98), Expect = 9e-16 Identities = 170/247 (69%), Gaps = 15/247 (6%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACAT 124 ||| ||||||| |||||| |||| |||| || ||||||||||| ||| ||| | Sbjct 23077 CAGCACTTTTATTTTGAACTAATTTGAGTACTCCAAGCAGGCCTTTGTGCCTGAAAATTC 23136 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | |||||||||| | |||||||| || | || || ||| ||||| | ||| || Sbjct 23137 TTGCATGGAATATTGGAATAGGA-GTTAGATTTTACTTTTGAGGTTTTCACATCCGAAGT 23195 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT-CAGAGGTGAAATTCTTG 243 |||| |||| ||||| || | ||| || |||| | ||||||||||||| Sbjct 23196 AATGGTTAAGAGGGACAGACAGGG----------ACATTTGTGTGGCGGTGAAATTCTTG 23245 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 || |||| |||||| | |||||| || |||| ||| ||||||| ||| || Sbjct 23246 AATCGTCACCAGACAAACTACAGTGAAAGCATTTGCCAAAAATGGTTTCATTGATC-TTG 23304 Query 304 AACGAAA 310 | ||||| Sbjct 23305 ATCGAAA 23311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914412168384