Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6250 140 5e-31 seq16895 89.7 8e-16 >seq6250 Length=31870 Score = 140 bits (154), Expect = 5e-31 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 || || |||||||||||| || ||||||||| |||||||||||||||||||||||| | Sbjct 20227 ATAGGACTATTTAGCAGGCCAAAGTCTCGTTCATTATCGGAATTAACCAGACAAATCGTT 20168 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||||||| |||||||||||| | | ||| ||||||||||| || || Sbjct 20167 CCACCAACTAAGAACGGTCATGCACCACCAACTACCGAAACAAGAAAGAGCCATTAA 20111 Score = 91.5 bits (100), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||| | | |||||||||||||||||||| Sbjct 20429 ACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCTCCGGACATCTAAGGGCATCACAGA 20370 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||||| | ||| || ||| | |||| || | | |||||||||||||| Sbjct 20369 CCTGTTATCG-CTC-AATTTCGTGCGACTGG-AGTCGCTTGTCCCTCTAAGAAG 20319 >seq16895 Length=13874 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | |||||||||||||||||||| Sbjct 734 ACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 793 Query 62 CCTGTTATTGCCTCAA 77 || |||||| |||||| Sbjct 794 CCAGTTATT-CCTCAA 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796135525323