Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3124 122 9e-26 >seq3124 Length=47935 Score = 122 bits (134), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACAT 63 ||| || ||||||||||| ||||| ||| | |||||||||||||| ||| ||| | Sbjct 1173 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 1232 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 | ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | Sbjct 1233 TTGCATGGAATAATGGAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 1290 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||| | || | ||| || |||||| | |||| ||| | |||||||||||||| Sbjct 1291 TAATGGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTG 1350 Query 184 GAT 186 ||| Sbjct 1351 GAT 1353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511573028320