Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq16895 129 1e-27 seq6250 125 1e-26 seq276 100 5e-19 >seq16895 Length=13874 Score = 129 bits (142), Expect = 1e-27 Identities = 187/259 (72%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | || || | ||| || || |||| |||||| ||||||||| Sbjct 844 CTTCTTAGAGGGACAAGCGACTGTATTCGAACAAAATT-GAGG-AATAACTGGTCTGTGA 787 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | |||||||||| |||||||| |||| | || |||||| | Sbjct 786 TGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTTTCAGCGAGTTTGGAAT 727 Query 192 CTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | ||||| || |||| ||||||| || | | | ||| || | || | | || Sbjct 726 CCTGGCCTGATCAGGT-TGGGTAAACTGAATCATAACCGTCATGACTGTTATCGGGGCTT 668 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| || | | | ||||| |||| ||| ||||| | ||||| ||| | | |||| Sbjct 667 GCAATTGTTCCCCGTGAACGAAGAATTCCTGGTAAGGGTAAGTCATAAGCTTGTGCTGAT 608 Query 310 TACGTCCCTGCCCTTTGTA 328 |||||| |||||||| || Sbjct 607 TACGTCTGTGCCCTTTTTA 589 >seq6250 Length=31870 Score = 125 bits (138), Expect = 1e-26 Identities = 186/259 (72%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | || ||| || || ||| || ||| | ||||||||||||||| Sbjct 20319 CTTCTTAGAGGGACAAGCGACTCCAGTCGCACGAAATT-GAG-CGATAACAGGTCTGTGA 20376 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | | |||||||| |||||||| |||| | || |||||| | Sbjct 20377 TGCCCTTAGATGTCCGGAGCCGCACGTGCGCTACAATGACGGTTTCAGCGAGTTTGGAAT 20436 Query 192 CTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||| || |||| || |||| || ||| | |||||| | || | || Sbjct 20437 GCTGGCCTGAGTAGGT-TGAGTAAACTGAATAATAACCGTCGTGACTGAAATCGGTTCTT 20495 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || | || | | |||||||||| ||| ||||| || || || ||| | | |||| Sbjct 20496 GTAACTGTTCTCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTGATAAGCTTGTGCTGAT 20555 Query 310 TACGTCCCTGCCCTTTGTA 328 ||| ||||||| ||||||| Sbjct 20556 TACTTCCCTGCTCTTTGTA 20574 >seq276 Length=129665 Score = 100 bits (110), Expect = 5e-19 Identities = 176/245 (72%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 75 CTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 |||| |||||| | | | |||| ||| ||| || ||| ||||||| || || ||||| Sbjct 73876 CTTAAAGGGACAAGCAACGCAAGTCGAACGAAATT-GAG-CAATAACGTGTTTGAGATGC 73819 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||| | ||| ||||| || | ||| |||| | || |||||| | | | Sbjct 73818 CCTTAGATGTCCGGGGTAGCACGTGCACCACAATGACGGTTTCAGCGAGTTTGGAATCCT 73759 Query 195 GGCCGGA--AGGTCTGGGTAATCTTG--TTAAACTCTGTCGTG-CTGGGGATAGAGCATT 249 |||| || |||| ||||||| ||| ||||| || | ||| ||||| || | || || Sbjct 73758 GGCCTGAGCAGGT-TGGGTAA-ATTGAATTAAAACCT-TTGTGACTGGGAATGGTGC-TT 73703 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||| | || | | | |||||||||| ||| |||||||| ||| ||| ||| ||| Sbjct 73702 GCAAATGTTCCCCGTGAACGAGGAATTCCTGGTAAGCGCAATTCACAAGCTTGCGCAGAT 73643 Query 310 TACGT 314 ||||| Sbjct 73642 TACGT 73638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946384621824