Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7081 246 1e-62 seq8542 192 2e-46 seq71848 176 1e-41 seq20457 156 1e-35 seq22712 145 2e-32 seq25578 127 7e-27 seq5075 127 7e-27 seq23393 125 2e-26 seq36119 105 2e-20 seq14609 105 2e-20 seq34895 104 8e-20 seq4554 100 9e-19 seq16699 96.9 1e-17 seq10020 82.4 2e-13 seq11872 77.0 1e-11 seq5466 77.0 1e-11 seq177 75.2 4e-11 >seq7081 Length=29187 Score = 246 bits (272), Expect = 1e-62 Identities = 217/270 (80%), Gaps = 12/270 (4%) Strand=Plus/Plus Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTT-------G 225 ||||| || | ||| |||| ||| |||| || | || |||| |||||||| | Sbjct 9854 TTCCGTTTTACTGAATAAGAAAAGAAACAATGACGGCGGTGGAATTTCACTGACAACAAG 9913 Query 226 CGCCGAAAC----GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGAC 281 | ||||| | || | || | ||||||| | ||| || |||||||||||||| Sbjct 9914 CTCCGAAGGATCTGTCTACTACCTGTTCTACATCCGTCATATCTCCTCACAAAGTCGGAC 9973 Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 |||||||| |||||||||||||||||||||||||| || | |||||||||||||||||| Sbjct 9974 TAGAGTCACGCTCAACAGGGTCTTCTTTCCCCGCTAATGCTGCCAAGCCCGTTCCCTTGA 10033 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| Sbjct 10034 -TGTGGTTTCGCTATGTAGTAGATAGGGACAGTAGTAATCTCGTCAATCCATTCATGCGC 10092 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||||||||||||||| |||||||| Sbjct 10093 ATCACTAATTAGATGACGAGGTATTTGGCT 10122 Score = 141 bits (156), Expect = 3e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 12000 GAGAGTCATATTTACTCCCGCCGTTTACCCTCGCTTGATTGAATTTCTTCACTTTGACAT 12059 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||| || |||| |||||||||||||| Sbjct 12060 TCAGAGCACTTGGAAGAATTCACATTGCGTCAA 12092 >seq8542 Length=25292 Score = 192 bits (212), Expect = 2e-46 Identities = 162/197 (82%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 ||| ||| ||||||| ||| ||| |||||||||| || |||| | ||||||||| Sbjct 21555 CCATTTACGCTACACCCGTCATGTCTCGTCACAAAGTCAGATCAGAGGCTAGCTCAACAC 21496 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 || |||| | |||||| |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 21495 GGCCTTCATGGCCCGCTTATTCTGCCTAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 21436 Query 360 GTAGATAGG-GACAGTGGGAATC---TCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||| ||| ||||||||||| | ||||||| ||||||||||||||| ||||||| Sbjct 21435 GTAGAAAGGATCCAGTGGGAATCTAGTAGTTAATCTATTCATGCGCGTCACCGATTAGAT 21376 Query 416 GACGAGGCATTTGGCTA 432 | ||| ||||||||||| Sbjct 21375 GCCGACGCATTTGGCTA 21359 >seq71848 Length=795 Score = 176 bits (194), Expect = 1e-41 Identities = 99/100 (99%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 795 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCA 736 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||||||||||| Sbjct 735 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 696 >seq20457 Length=11235 Score = 156 bits (172), Expect = 1e-35 Identities = 138/171 (81%), Gaps = 11/171 (6%) Strand=Plus/Minus Query 207 GGTAGTGGTATTTCACTTGCG-------CCGAA--AC--GGCTCCCACTTATTCTACACC 255 ||| ||||||||||||| || ||||| || | ||||||||| ||||||||| Sbjct 5246 GGTGGTGGTATTTCACTGACGACAAGCCCCGAAGGACCTGTCTCCCACTTTTTCTACACC 5187 Query 256 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315 ||| ||| ||| ||| ||||||||||||||| ||||||||||||||||||||| || Sbjct 5186 CGTCATGTCTCCTCAGAAAATCGGACTAGAGTCAATCTCAACAGGGTCTTCTTTCCCAGC 5127 Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 | ||| ||||||||||||||||||| ||||||||||||| || |||| || Sbjct 5126 TACTTCTGCCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTACATTGTAGGTA 5076 >seq22712 Length=9894 Score = 145 bits (160), Expect = 2e-32 Identities = 89/95 (94%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||| |||||||||||||| ||||| ||||||||||||| |||| |||||||||||| || Sbjct 100 AAGACAGTCATAGTTACTCGCGCCGCTTACCCGCGCTTGATTGACTTTCTTCACTTTAAC 41 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||||||| Sbjct 40 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 6 >seq25578 Length=8445 Score = 127 bits (140), Expect = 7e-27 Identities = 84/93 (90%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 ||||||||||||||||||| ||| ||| | ||||||| ||||||||||||| |||||||| Sbjct 2607 GAGAGTCATAGTTACTCCCACCGGTTAGCAGCGCTTGATTGAATTTCTTCATTTTGACAT 2666 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | |||||||||| |||||||| ||||||||||| Sbjct 2667 TGAGAGCACTGGTCAGAAATCGCATTGCGTCAA 2699 >seq5075 Length=36273 Score = 127 bits (140), Expect = 7e-27 Identities = 84/93 (90%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 ||||||| || ||||||||||||||| ||||| |||| ||||||||||||| ||||| || Sbjct 34641 GAGAGTCTTATTTACTCCCGCCGTTTTCCCGCTCTTGATTGAATTTCTTCATTTTGATAT 34700 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | | ||||||||||||||||||||||||||||| Sbjct 34701 TGATAGCACTGGGCAGAAATCACATTGCGTCAA 34733 >seq23393 Length=9513 Score = 125 bits (138), Expect = 2e-26 Identities = 128/166 (77%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC-TTTCCCCGCTGATTCCGCCA 326 ||| ||| |||| || || ||||| |||||||||||||| |||| ||||| |||| | Sbjct 6860 TCATAAATTCGGGCTTGATTCAAGTTCAACAGGGTCTTCTTTTCTCCGCTAATTCTTCTG 6801 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 | || ||||| || |||||| ||||||||| ||||| || ||||| || | ||||| | Sbjct 6800 AACCGGTTCCATTAGCTGTGTTTTCGCTAGTTAGTATATGGGGACGGTAAAAGTCTCGGT 6741 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 || || || ||| || ||| |||||||||| | |||||||| || Sbjct 6740 AAACCCTTGATGAGCCACACCAATTAGATGATAAAGCATTTGGTTA 6695 >seq36119 Length=4851 Score = 105 bits (116), Expect = 2e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||| |||||| ||| ||| ||||||||||||||||| |||||||| Sbjct 1606 CGTCTCCCACTTATTGTACACCCGTCATGTCTCCTCACAAAGTCGGACTAGGGTCAAGCT 1665 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTC 321 ||||||| | ||||||||||||| |||| Sbjct 1666 CAACAGGATATTCTTTCCCCGCTAATTC 1693 >seq14609 Length=16068 Score = 105 bits (116), Expect = 2e-20 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 ||||| ||||| |||||| | | ||||||| | ||||||||||||| ||||||| ||| Sbjct 11895 GAGAGCCATAGAAACTCCCACTGCTTACCCGTGTTTGGTTGAATTTCCCCACTTTGGCAT 11836 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||| ||| |||||||||||| |||||| Sbjct 11835 TCAGAGCACAGGGAAGAAATCACATTACGTCAA 11803 >seq34895 Length=5147 Score = 104 bits (114), Expect = 8e-20 Identities = 57/57 (100%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 59 >seq4554 Length=38873 Score = 100 bits (110), Expect = 9e-19 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 |||||||||||||||| | |||||||||||||||||||||||||||| ||||| ||||| Sbjct 33990 CGCCGTTTACCCGCGCCTCATTGAATTTCTTCACTTTGACATTCAGAGTACTGGACAGAA 34049 Query 517 ATCACATT 524 |||||||| Sbjct 34050 ATCACATT 34057 >seq16699 Length=14054 Score = 96.9 bits (106), Expect = 1e-17 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 |||||| ||||||||| ||||| | ||| | |||||||| ||||||||||||||||||| Sbjct 2335 CGCTAGGTAGTAGATAAGGACAATAGGACGCCCGTTAATCTATTCATGCGCGTCACTAAT 2276 Query 411 TAGATGACGAGGCATTTG 428 ||||||||| ||||||| Sbjct 2275 TAGATGACGTTGCATTTG 2258 >seq10020 Length=22297 Score = 82.4 bits (90), Expect = 2e-13 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 |||||||||||||| ||| |||||||||||||| |||||||||||| |||| ||||||| Sbjct 4997 GCCGTTTACCCGCGTTTGATTGAATTTCTTCAC-TTGACATTCAGATCACTTAGCAGAAA 5055 Query 518 TCAC-ATTG 525 ||| |||| Sbjct 5056 GCACTATTG 5064 >seq11872 Length=19289 Score = 77.0 bits (84), Expect = 1e-11 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 |||||||| || ||||||| ||||| || |||||||||||||||||||||||||| ||| Sbjct 10894 CCGCGCTTAATTAAATTTCTCCACTTCGAAATTCAGAGCACTGGGCAGAAATCACACTGC 10835 >seq5466 Length=34691 Score = 77.0 bits (84), Expect = 1e-11 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||| | || ||||||||||||| |||||||||||||||| | |||||||||||||| Sbjct 9913 CCGCACCTGATTGAATTTCTTCATTTTGACATTCAGAGCAATCGGCAGAAATCACAT 9969 >seq177 Length=148660 Score = 75.2 bits (82), Expect = 4e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519 ||||||||||| ||| |||| ||||||||||| || |||||||||||| | |||||||| Sbjct 53291 GTTTACCCGCGGTTGATTGAGTTTCTTCACTTCGAAATTCAGAGCACTAGTCAGAAATC 53349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633792370784