Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12]
86,083 sequences; 834,556,378 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq7081 246 1e-62
seq8542 192 2e-46
seq71848 176 1e-41
seq20457 156 1e-35
seq22712 145 2e-32
seq25578 127 7e-27
seq5075 127 7e-27
seq23393 125 2e-26
seq36119 105 2e-20
seq14609 105 2e-20
seq34895 104 8e-20
seq4554 100 9e-19
seq16699 96.9 1e-17
seq10020 82.4 2e-13
seq11872 77.0 1e-11
seq5466 77.0 1e-11
seq177 75.2 4e-11
>seq7081
Length=29187
Score = 246 bits (272), Expect = 1e-62
Identities = 217/270 (80%), Gaps = 12/270 (4%)
Strand=Plus/Plus
Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTT-------G 225
||||| || | ||| |||| ||| |||| || | || |||| |||||||| |
Sbjct 9854 TTCCGTTTTACTGAATAAGAAAAGAAACAATGACGGCGGTGGAATTTCACTGACAACAAG 9913
Query 226 CGCCGAAAC----GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGAC 281
| ||||| | || | || | ||||||| | ||| || ||||||||||||||
Sbjct 9914 CTCCGAAGGATCTGTCTACTACCTGTTCTACATCCGTCATATCTCCTCACAAAGTCGGAC 9973
Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341
|||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 9974 TAGAGTCACGCTCAACAGGGTCTTCTTTCCCCGCTAATGCTGCCAAGCCCGTTCCCTTGA 10033
Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401
||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 10034 -TGTGGTTTCGCTATGTAGTAGATAGGGACAGTAGTAATCTCGTCAATCCATTCATGCGC 10092
Query 402 GTCACTAATTAGATGACGAGGCATTTGGCT 431
|||||||||||||||||||| ||||||||
Sbjct 10093 ATCACTAATTAGATGACGAGGTATTTGGCT 10122
Score = 141 bits (156), Expect = 3e-31
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
|||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 12000 GAGAGTCATATTTACTCCCGCCGTTTACCCTCGCTTGATTGAATTTCTTCACTTTGACAT 12059
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
|||||||||| || |||| ||||||||||||||
Sbjct 12060 TCAGAGCACTTGGAAGAATTCACATTGCGTCAA 12092
>seq8542
Length=25292
Score = 192 bits (212), Expect = 2e-46
Identities = 162/197 (82%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299
||| ||| ||||||| ||| ||| |||||||||| || |||| | |||||||||
Sbjct 21555 CCATTTACGCTACACCCGTCATGTCTCGTCACAAAGTCAGATCAGAGGCTAGCTCAACAC 21496
Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359
|| |||| | |||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 21495 GGCCTTCATGGCCCGCTTATTCTGCCTAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 21436
Query 360 GTAGATAGG-GACAGTGGGAATC---TCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
||||| ||| ||||||||||| | ||||||| ||||||||||||||| |||||||
Sbjct 21435 GTAGAAAGGATCCAGTGGGAATCTAGTAGTTAATCTATTCATGCGCGTCACCGATTAGAT 21376
Query 416 GACGAGGCATTTGGCTA 432
| ||| |||||||||||
Sbjct 21375 GCCGACGCATTTGGCTA 21359
>seq71848
Length=795
Score = 176 bits (194), Expect = 1e-41
Identities = 99/100 (99%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 795 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCA 736
Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 696
>seq20457
Length=11235
Score = 156 bits (172), Expect = 1e-35
Identities = 138/171 (81%), Gaps = 11/171 (6%)
Strand=Plus/Minus
Query 207 GGTAGTGGTATTTCACTTGCG-------CCGAA--AC--GGCTCCCACTTATTCTACACC 255
||| ||||||||||||| || ||||| || | ||||||||| |||||||||
Sbjct 5246 GGTGGTGGTATTTCACTGACGACAAGCCCCGAAGGACCTGTCTCCCACTTTTTCTACACC 5187
Query 256 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315
||| ||| ||| ||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 5186 CGTCATGTCTCCTCAGAAAATCGGACTAGAGTCAATCTCAACAGGGTCTTCTTTCCCAGC 5127
Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
| ||| ||||||||||||||||||| ||||||||||||| || |||| ||
Sbjct 5126 TACTTCTGCCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTACATTGTAGGTA 5076
>seq22712
Length=9894
Score = 145 bits (160), Expect = 2e-32
Identities = 89/95 (94%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
|||| |||||||||||||| ||||| ||||||||||||| |||| |||||||||||| ||
Sbjct 100 AAGACAGTCATAGTTACTCGCGCCGCTTACCCGCGCTTGATTGACTTTCTTCACTTTAAC 41
Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
|||||||||||||||||||||||||||||||||||
Sbjct 40 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 6
>seq25578
Length=8445
Score = 127 bits (140), Expect = 7e-27
Identities = 84/93 (90%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
||||||||||||||||||| ||| ||| | ||||||| ||||||||||||| ||||||||
Sbjct 2607 GAGAGTCATAGTTACTCCCACCGGTTAGCAGCGCTTGATTGAATTTCTTCATTTTGACAT 2666
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
| |||||||||| |||||||| |||||||||||
Sbjct 2667 TGAGAGCACTGGTCAGAAATCGCATTGCGTCAA 2699
>seq5075
Length=36273
Score = 127 bits (140), Expect = 7e-27
Identities = 84/93 (90%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
||||||| || ||||||||||||||| ||||| |||| ||||||||||||| ||||| ||
Sbjct 34641 GAGAGTCTTATTTACTCCCGCCGTTTTCCCGCTCTTGATTGAATTTCTTCATTTTGATAT 34700
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
| | |||||||||||||||||||||||||||||
Sbjct 34701 TGATAGCACTGGGCAGAAATCACATTGCGTCAA 34733
>seq23393
Length=9513
Score = 125 bits (138), Expect = 2e-26
Identities = 128/166 (77%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC-TTTCCCCGCTGATTCCGCCA 326
||| ||| |||| || || ||||| |||||||||||||| |||| ||||| |||| |
Sbjct 6860 TCATAAATTCGGGCTTGATTCAAGTTCAACAGGGTCTTCTTTTCTCCGCTAATTCTTCTG 6801
Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386
| || ||||| || |||||| ||||||||| ||||| || ||||| || | ||||| |
Sbjct 6800 AACCGGTTCCATTAGCTGTGTTTTCGCTAGTTAGTATATGGGGACGGTAAAAGTCTCGGT 6741
Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|| || || ||| || ||| |||||||||| | |||||||| ||
Sbjct 6740 AAACCCTTGATGAGCCACACCAATTAGATGATAAAGCATTTGGTTA 6695
>seq36119
Length=4851
Score = 105 bits (116), Expect = 2e-20
Identities = 76/88 (86%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293
|| |||||||||||| |||||| ||| ||| ||||||||||||||||| ||||||||
Sbjct 1606 CGTCTCCCACTTATTGTACACCCGTCATGTCTCCTCACAAAGTCGGACTAGGGTCAAGCT 1665
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTC 321
||||||| | ||||||||||||| ||||
Sbjct 1666 CAACAGGATATTCTTTCCCCGCTAATTC 1693
>seq14609
Length=16068
Score = 105 bits (116), Expect = 2e-20
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
||||| ||||| |||||| | | ||||||| | ||||||||||||| ||||||| |||
Sbjct 11895 GAGAGCCATAGAAACTCCCACTGCTTACCCGTGTTTGGTTGAATTTCCCCACTTTGGCAT 11836
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
||||||||| ||| |||||||||||| ||||||
Sbjct 11835 TCAGAGCACAGGGAAGAAATCACATTACGTCAA 11803
>seq34895
Length=5147
Score = 104 bits (114), Expect = 8e-20
Identities = 57/57 (100%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 59
>seq4554
Length=38873
Score = 100 bits (110), Expect = 9e-19
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516
|||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||
Sbjct 33990 CGCCGTTTACCCGCGCCTCATTGAATTTCTTCACTTTGACATTCAGAGTACTGGACAGAA 34049
Query 517 ATCACATT 524
||||||||
Sbjct 34050 ATCACATT 34057
>seq16699
Length=14054
Score = 96.9 bits (106), Expect = 1e-17
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410
|||||| ||||||||| ||||| | ||| | |||||||| |||||||||||||||||||
Sbjct 2335 CGCTAGGTAGTAGATAAGGACAATAGGACGCCCGTTAATCTATTCATGCGCGTCACTAAT 2276
Query 411 TAGATGACGAGGCATTTG 428
||||||||| |||||||
Sbjct 2275 TAGATGACGTTGCATTTG 2258
>seq10020
Length=22297
Score = 82.4 bits (90), Expect = 2e-13
Identities = 61/69 (88%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517
|||||||||||||| ||| |||||||||||||| |||||||||||| |||| |||||||
Sbjct 4997 GCCGTTTACCCGCGTTTGATTGAATTTCTTCAC-TTGACATTCAGATCACTTAGCAGAAA 5055
Query 518 TCAC-ATTG 525
||| ||||
Sbjct 5056 GCACTATTG 5064
>seq11872
Length=19289
Score = 77.0 bits (84), Expect = 1e-11
Identities = 53/60 (88%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526
|||||||| || ||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct 10894 CCGCGCTTAATTAAATTTCTCCACTTCGAAATTCAGAGCACTGGGCAGAAATCACACTGC 10835
>seq5466
Length=34691
Score = 77.0 bits (84), Expect = 1e-11
Identities = 51/57 (89%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523
|||| | || ||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 9913 CCGCACCTGATTGAATTTCTTCATTTTGACATTCAGAGCAATCGGCAGAAATCACAT 9969
>seq177
Length=148660
Score = 75.2 bits (82), Expect = 4e-11
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519
||||||||||| ||| |||| ||||||||||| || |||||||||||| | ||||||||
Sbjct 53291 GTTTACCCGCGGTTGATTGAGTTTCTTCACTTCGAAATTCAGAGCACTAGTCAGAAATC 53349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1633792370784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |