Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq7655 78.8 2e-12 seq5970 78.8 2e-12 >seq7655 Length=27561 Score = 78.8 bits (86), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||| | || | ||||| || | || | Sbjct 17302 GTACGAGAGGAACCGCAGG-TTCAGACCT-TTGGTATATGTGCCTGTCCGAAGGGCCAAT 17359 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | |||| ||||| ||||| |||||| ||| Sbjct 17360 GGTGCGAAGCTACCATCTGAGGGATTAGGAGTGAATGCCTCCAAGTCGGAATCCCGTCCA 17419 Query 121 GA 122 || Sbjct 17420 GA 17421 >seq5970 Length=32893 Score = 78.8 bits (86), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 || ||||||||||||||| |||||| | |||| | || | ||| | || | || | Sbjct 8629 GTGCGAGAGGAACCGCGGG-TTCAGAC-ATTTGGCATATGTGCCTGGCCGAAAGGCCAAT 8686 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | |||||||| ||||||| |||||| ||| Sbjct 8687 GGTGCGAAGCTACCATCTGAGGGATTAGGATTGAACGCCCCTAAGTCTGAATCCCGTCCA 8746 Query 121 GA 122 || Sbjct 8747 GA 8748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818516845312