Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18034 134 1e-26 seq2508 132 4e-26 >seq18034 Length=13003 Score = 134 bits (148), Expect = 1e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 || ||| || || ||||| || || || || || || | ||||||| |||||||| || Sbjct 8884 AATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAATTTCAGT 8943 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 ||||||||||||||| || || |||| |||||||| || |||||||| |||||||| Sbjct 8944 GCACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGGTTGCATGC 9003 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 |||||||| | |||| ||||| | || || |||| ||| | | ||| ||||| |||| Sbjct 9004 GTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAATGGCATGCC 9062 >seq2508 Length=53929 Score = 132 bits (146), Expect = 4e-26 Identities = 226/328 (69%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 ||||| | ||| || || | || || || ||||| | || || |||| |||||| Sbjct 45895 AATCCCCTTCGCTTTGTGCTCTTTCCTATTCAGTATAACGAAATATGGCAATACTACAAA 45836 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 ||||| | || ||||| ||||| || ||||| |||||| | || || || ||| || Sbjct 45835 AAGGCAGTGGCCTCCTTTTGGACTGTTGAGGAAGTCGATCTTTCAAAGGATCTGACCGAT 45776 Query 61165 TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||||| || ||| | || || | || ||||| | || ||||||| |||||| Sbjct 45775 TGGGAACGATTAAAGGTGGGAGAGCGCCACTTCATATCTTACGTCCTGGCGTTTTTTGCC 45716 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || |||||||||||| || ||| | | || || ||| || ||||| ||| | Sbjct 45715 GCCAGCGACGGTATCGTCCTCGAAAATCTGCTCGAGCGATTCAGTCAAGAGGTTCAAATT 45656 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | || ||||| || || || || | || |||||| |||||||| |||| || || ||| Sbjct 45655 CCTGAAGCGCGCTGCTTTTATGGAATGCAAATTGCCGTGGAGAATATCCATTCTGAAATG 45596 Query 61345 TACAGTGTTCTCATCGATACGTACATCA 61372 || || | || || || |||||||||| Sbjct 45595 TATTGTCTACTTATAGACACGTACATCA 45568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397150896875120