Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq7617 159 5e-37 seq3584 147 3e-33 seq926 147 3e-33 seq4286 145 1e-32 seq991 141 1e-31 seq4407 120 5e-25 seq2630 96.9 5e-18 seq1907 77.0 5e-12 seq181 75.2 2e-11 >seq7617 Length=25701 Score = 159 bits (176), Expect = 5e-37 Identities = 174/222 (78%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 ||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| |||| Sbjct 1 CAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-CCTC 58 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATTACC 122 ||| | | ||||||||||| | ||||| |||||| | || | || ||||| Sbjct 59 GTTCACGGGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTTATGATACAGTTTACC 118 Query 123 CGGACCTG-TC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | ||||| || ||||| | | | ||||| |||| | ||| |||||||| ||||||| Sbjct 119 CA-ACCTGCTCAGGCCAGGATTCCAAACTCGCTGAAACCGTCATTGTAGCGCACGTGCGG 177 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||| | |||||||||||||||||||||||||||||| ||||| Sbjct 178 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 218 >seq3584 Length=85547 Score = 147 bits (162), Expect = 3e-33 Identities = 173/225 (77%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||| ||| ||| ||||| |||||| || ||||| || |||| | Sbjct 19362 GTACAAAGGACAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGAAATT-C 19419 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| | || ||||||||||| | ||||| |||||| | || | || || Sbjct 19420 CTCGTTCACGAGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTCATAATACAGTTT 19479 Query 120 ACCCGGACCTG-TC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||||| || ||||| | | || ||||| |||| | ||| |||||| | | || Sbjct 19480 ACCCA-ACCTGCTCAGGCCAGGATTCTAAACTCGCTGAAACCGTCATTGTAGCTCACATG 19538 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 19539 CGGCCCCAGACATCTAAGGGCATCACAGACCGGTTATTG-CTCAA 19582 >seq926 Length=370264 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||||||| || ||| ||||| |||||| || ||||| ||||||| | Sbjct 315618 GTACAAAGGGCAAGGACGTAACCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 315675 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| | | ||| |||||| ||||||| |||||| | || | || || Sbjct 315676 CTCGTTCACGGGGAACGGTTGCAAGCCCCTATCCCAGTCACGACGGTTATGATACAGTTT 315735 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| || || ||||| ||| | ||||| |||| | ||| |||||||| ||||| Sbjct 315736 ACCCAACCCGTTCAGGCCAGGGTTCCAAACTCGCTGAAACCGTCACTGTAGCGCACGTGC 315795 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | ||||||||||||||||||||| |||||||| ||||| Sbjct 315796 GGCCCCGGACATCTAAGGGCATCACAGACTTGTTATTG-CTCAA 315838 Score = 129 bits (142), Expect = 9e-28 Identities = 159/211 (75%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 14 GGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACC 73 ||||||| || ||| ||||| |||||| || ||||| ||||||| ||||||| | | Sbjct 316053 GGACGTAACCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-CCTCGTTCACGGGG 316110 Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATTACCCGGACCTGTC 132 ||| |||||| ||||||| |||||| | || | || |||||| || || Sbjct 316111 AACGGTTGCAAGCCCCTATCCCAGTCACGACGGTTATGATACAGTTTACCCAACCCGTTC 316170 Query 133 -GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATC 191 ||||| ||| | ||||| |||| | ||| |||||||| |||||||||| | ||||| Sbjct 316171 AGGCCAGGGTTCCAAACTCGCTGAAACCGTCACTGTAGCGCACGTGCGGCCCCGGACATC 316230 Query 192 TAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||||||||||| |||||||| ||||| Sbjct 316231 TAAGGGCATCACAGACTTGTTATTG-CTCAA 316260 >seq4286 Length=141198 Score = 145 bits (160), Expect = 1e-32 Identities = 168/217 (77%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 9 GGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGA 68 |||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| ||||||| | Sbjct 71936 GGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-CCTCGTTCA 71993 Query 69 AGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATTACCCGGAC 127 | ||||||||||| | ||||| || ||| | || | || |||||| || Sbjct 71994 CGGGGAACAATTGCAAGCCCCGATCCCAGTCCCGACGGTTATGATACAGTTTACCCA-AC 72052 Query 128 CTG-TC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAG 185 ||| || ||||| | | | ||||| |||| | ||| |||||||| |||||||||| | Sbjct 72053 CTGCTCAGGCCAGGATTCCAAACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCG 72112 Query 186 AACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||||||||||||||||||||||||| ||||| Sbjct 72113 GACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 72148 >seq991 Length=221747 Score = 141 bits (156), Expect = 1e-31 Identities = 169/220 (77%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 44341 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 44284 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| | | || |||||||| | ||||| |||||| | || | || || Sbjct 44283 CTCGTTCACGGGAAA-AATTGCAAGCCCCGATCCCAGTCACGACGGTTATGATACAGTTT 44225 Query 120 ACCCGGACCTG-TC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||||| || ||||| | | | ||||| |||| | ||| |||||||| |||| Sbjct 44224 ACCCA-ACCTGCTCAGGCCAGGATTCCAAACTCGCTGAAACCGTCATTGTAGCGCACGTG 44166 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||| | ||| ||||||||||||||||| |||||||| Sbjct 44165 CGGCCCCGGACAATTAAGGGCATCACAGACCCGTTATTGC 44126 Score = 114 bits (126), Expect = 2e-23 Identities = 154/205 (75%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75 ||||| ||| ||| ||||| |||||| || ||||| ||||||| ||||||| | | || Sbjct 44918 ACGTAATCACCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-CCTCGTTCACGGGAAA 44861 Query 76 CAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATTACCCGGACCTG-TC- 132 |||||||| | ||||| |||||| | || | || |||||| ||||| || Sbjct 44860 -AATTGCAAGCCCCGATCCCAGTCACGACGGTTATGATACAGTTTACCCA-ACCTGCTCA 44803 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 ||||| | | | ||||| |||| | ||| |||||||| |||||||||| | ||| | Sbjct 44802 GGCCAGGATTCCAAACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACAATT 44743 Query 193 AAGGGCATCACAGACCTGTTATTGC 217 |||||||||||||||| |||||||| Sbjct 44742 AAGGGCATCACAGACCCGTTATTGC 44718 >seq4407 Length=57087 Score = 120 bits (132), Expect = 5e-25 Identities = 167/225 (74%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 8964 GTACAAAGGGCAGGGACGTAGTCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 9021 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| | || | |||||| | ||||| |||||| | || | || || Sbjct 9022 CTCGTTCACTGGGAAAAGTTGCAAGCCCCGATCCCAGTCACGACGGTTATGATACAGTTT 9081 Query 120 ACCCGGACCTG-TC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 || | ||||| || ||||| | | | ||||| || | ||| ||||| || |||| Sbjct 9082 ACTCA-ACCTGCTCAGGCCAGGATTCCAAACTCGCTGGAACTGTCACTGTAGAGCACGTG 9140 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||| | |||| ||||||||||||||||||||||||| ||||| Sbjct 9141 AAGCCTCGGACATATAAGGGCATCACAGACCTGTTATTG-CTCAA 9184 >seq2630 Length=95923 Score = 96.9 bits (106), Expect = 5e-18 Identities = 162/225 (72%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||| ||| ||| ||||| |||||| || ||||| | ||||||| Sbjct 94124 GTACAAAGTGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCACGAATTTC 94066 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 ||||| | |||||| || | ||||| |||||| | || | || || Sbjct 94065 -TCGTTCTCGGGGCACAATTATAAGCCCCGATCCCGGTCACGACGGTTATGATACAGTTT 94007 Query 120 ACCCGGACCTG-TC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 | | ||||| || ||||| | | |||| || | ||| |||||||| |||| Sbjct 94006 ATGCA-ACCTGCTCAGGCCAGCATTTCAAACTCACTGCTACCGTCATTGTAGCGCACGTG 93948 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||| | ||||| |||| ||||||||||||| ||||| ||||| Sbjct 93947 CGGCCCCGGACATCCAAGGCCATCACAGACCTGCTATTG-CTCAA 93904 >seq1907 Length=293579 Score = 77.0 bits (84), Expect = 5e-12 Identities = 55/62 (89%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||| |||||||| ||||||| || | |||||||||||||||| ||||||||||||| ||| Sbjct 292431 TCATTGTAGCGCACGTGCGGTCCCGGACATCTAAGGGCATCAGAGACCTGTTATTG-CTC 292373 Query 221 AA 222 || Sbjct 292372 AA 292371 >seq181 Length=728196 Score = 75.2 bits (82), Expect = 2e-11 Identities = 63/76 (83%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||||||| | || |||| |||| || | |||||| | |||||||||||| |||||| | Sbjct 43267 ACTCGTTGGAAACGTCAGAGTAGTGCACATGCGGCTCCAAACATCTAAGGGAATCACAAA 43326 Query 207 CCTGTTATTGCCTCAA 222 |||||||||| ||||| Sbjct 43327 CCTGTTATTG-CTCAA 43341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751853148970