Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq7617 199 7e-49 seq4514 199 7e-49 seq4286 199 7e-49 seq4407 183 6e-44 seq3872 147 4e-33 seq1326 136 7e-30 seq2499 125 1e-26 seq926 125 1e-26 seq45 123 5e-26 seq1907 100 5e-19 >seq7617 Length=25701 Score = 199 bits (220), Expect = 7e-49 Identities = 201/255 (79%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACAT 124 ||| || ||||||||||| ||||| ||||| |||||||||||||||| | ||| | Sbjct 966 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 907 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCG 183 | |||||||||||| ||||||||| | |||||||||||||||||||| | ||| ||| | Sbjct 906 TTGCATGGAATAATGGAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 849 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||| |||| ||||| || |||||| | |||| ||| |||||||||||||||| Sbjct 848 TAATGGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTG 789 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| |||| |||||| |||||||| || ||||||||||||||||| ||| || Sbjct 788 GATCGCCGCCAGACAAACTACAGCGAAAGCATTTGCCAAGGATGTTTTCATTGATC-TTG 730 Query 304 AACGAAAGTTAGGGG 318 | ||||||| || || Sbjct 729 AGCGAAAGTCAGAGG 715 >seq4514 Length=55800 Score = 199 bits (220), Expect = 7e-49 Identities = 201/255 (79%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACAT 124 ||| || ||||||||||| ||||| ||||| |||||||||||||||| | ||| | Sbjct 31401 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 31342 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCG 183 | |||||||||||| ||||||||| | |||||||||||||||||||| | ||| ||| | Sbjct 31341 TTGCATGGAATAATGGAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 31284 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||| |||| ||||| || |||||| | |||| ||| |||||||||||||||| Sbjct 31283 TAATGGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTG 31224 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| |||| |||||| |||||||| || ||||||||||||||||| ||| || Sbjct 31223 GATCGCCGCCAGACAAACTACAGCGAAAGCATTTGCCAAGGATGTTTTCATTGATC-TTG 31165 Query 304 AACGAAAGTTAGGGG 318 | ||||||| || || Sbjct 31164 AGCGAAAGTCAGAGG 31150 Score = 141 bits (156), Expect = 2e-31 Identities = 184/251 (73%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACAT 124 ||| || ||||||||||| ||||| ||||| |||||||||||||||| | ||| | Sbjct 30689 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 30630 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | |||||||||||| ||| |||| | |||||| ||||||||| || | | ||| || Sbjct 30629 TTGCATGGAATAATGAAATGGGAC-TCTGGTTCTGTTTTGTTGGGTTTTGGATCCGAAGT 30571 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 | || ||| ||||||| | | || | |||| |||||||||||||||||| || Sbjct 30570 AGTGGCTAAGGGGGATAGACTGAGGGATTTGTATGGCGGTGTCAGAGGTGAAATTCTCGG 30511 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || | |||| ||||| | ||||| ||| || | ||| |||||||| ||| ||| Sbjct 30510 ATCGTTACCAGACATACTACGGTGAAAGTGTTTGCCGAAGATATTTTCATTGATC-TTGA 30452 Query 305 ACGAAAGTTAG 315 ||||||| || Sbjct 30451 GCGAAAGTGAG 30441 >seq4286 Length=141198 Score = 199 bits (220), Expect = 7e-49 Identities = 201/255 (79%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACAT 124 ||| || ||||||||||| ||||| ||||| |||||||||||||||| | ||| | Sbjct 72896 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 72837 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCG 183 | |||||||||||| ||||||||| | |||||||||||||||||||| | ||| ||| | Sbjct 72836 TTGCATGGAATAATGGAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 72779 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||| |||| ||||| || |||||| | |||| ||| |||||||||||||||| Sbjct 72778 TAATGGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTG 72719 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| |||| |||||| |||||||| || ||||||||||||||||| ||| || Sbjct 72718 GATCGCCGCCAGACAAACTACAGCGAAAGCATTTGCCAAGGATGTTTTCATTGATC-TTG 72660 Query 304 AACGAAAGTTAGGGG 318 | ||||||| || || Sbjct 72659 AGCGAAAGTCAGAGG 72645 >seq4407 Length=57087 Score = 183 bits (202), Expect = 6e-44 Identities = 195/254 (77%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACAT 124 ||| || ||||||||||| ||||| ||||| ||||||||||||| || | ||| | Sbjct 9922 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTATGTGCCTGAAAATTC 9863 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | |||||||||||| ||||||| | | |||||| ||||||||||||| | | ||| || Sbjct 9862 TTGCATGGAATAATGGAATAGGCCTT-CGGTTCCATTTTGTTGGTTTTTGGATCCGAAGT 9804 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 |||| |||| |||||| | |||||| | |||| ||| ||||||||||||||||| Sbjct 9803 AATGGTTAAGAGGGATGGACGGGGGCATTCGTATGGCGGTGTAAGAGGTGAAATTCTTGG 9744 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || |||| |||||| |||||||| || ||||||| |||||||||| ||| ||| Sbjct 9743 ATCGCCGCCAGACAAACTACAGCGAAAGCATTTACCAAGGTTGTTTTCATTGATC-TTGA 9685 Query 305 ACGAAAGTTAGGGG 318 ||||| ||||| Sbjct 9684 GTGAAAGCCAGGGG 9671 >seq3872 Length=176994 Score = 147 bits (162), Expect = 4e-33 Identities = 183/247 (74%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG--CTCGAATACATTAGC 128 || || |||||||| ||||| ||||| ||||| |||| ||||| | |||||| | || Sbjct 100729 ACGTTCACTTTGAACAAATTTGAGTGCTCAAAACAGGTCTTTGTGCCCGAATATTCTTGC 100670 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 ||||| || | |||||| || | ||||||||||||||||| ||| | ||| ||||| Sbjct 100669 ATGGAGTAGTGGAATAGAACTT-CGGTTCTATTTTGTTGGCTTCCGGATCCGAACTAATG 100611 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||| ||||| || |||||| | ||| ||| ||||||||||||||||||| Sbjct 100610 GTTAAGAGGGACAGGCGGGGGCATTTTTATGGCGGTGTTGGAGGTGAAATTCTTGGATTG 100551 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 |||| |||| |||||||| || |||| ||||||||||| ||| ||| ||| Sbjct 100550 CCGCCAGACAAACTGTAGCGAAAGCATTTGCCAAAAATGTTTTCATTGATC-TTGAGCGA 100492 Query 309 AAGTTAG 315 |||| || Sbjct 100491 AAGTCAG 100485 >seq1326 Length=435232 Score = 136 bits (150), Expect = 7e-30 Identities = 184/249 (74%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCAT 130 |||| | |||| ||||| |||| ||||| |||||||||| || ||| || |||| Sbjct 32857 TTTAATCTGAACAAATTTTAGTGCTCAAACCAGGCCTTTGTGCCTGAAATTTCTT-GCAT 32915 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGA 189 || ||||| |||||||| || |||||||||||||||||| | ||| || ||||| Sbjct 32916 GGGATAATGGAATAGGAGGTT-GGTTCTATTTTGTTGGTTA-TCGGATCCAGATTAATGG 32973 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| |||||||| |||||| | |||| ||| ||||||||||| ||||||| Sbjct 32974 TTAAGAGGGATAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATCCTTGGATCGC 33033 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||| |||||| ||||| || || | ||||||||||||| | ||| ||| |||| Sbjct 33034 CGCCGGACAAACTACAGCGAAGGCATTTGCAAAGGATGTTTTCACTGATC-TTGAGCGAA 33092 Query 310 AGTTAGGGG 318 ||| || || Sbjct 33093 AGTCAGAGG 33101 >seq2499 Length=119867 Score = 125 bits (138), Expect = 1e-26 Identities = 182/252 (72%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 51 GGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT 110 |||||| | || | ||| | ||||||||||| | ||| ||||| ||||||||||||| Sbjct 17036 GGGTGTCGCAGGAGGACAGCAAGTTTACTTTGAACATATTTGAGTGCTCAAAGCAGGCCT 16977 Query 111 TTGCTCGAATACATTAG--CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG 168 ||| | | | ||| |||||||||| ||||||||| | ||||||| |||| |||| Sbjct 16976 TTGTGCCTAGAAATTCTTCCATGGAATAAGGGAATAGGACCT-CGGTTCTGTTTTATTGG 16918 Query 169 TTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTC 227 || || ||| | | |||||| ||| ||||| || |||||| | |||| ||| Sbjct 16917 TT-CTTGGATCTGAAGTAATGGTTAGGAGGGACAGGCGGGGGCATTTGTATAGCCGTGTA 16859 Query 228 AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATG 287 ||||||||||| ||||||| |||| |||| ||| || ||| ||| ||||| Sbjct 16858 AGAGGTGAAATACTTGGATCGCCGCCAGACAAACTGCTGTGATGATATTCGCCAGGGATG 16799 Query 288 TTTTCATTAATC 299 ||||||| ||| Sbjct 16798 CTTTCATTGATC 16787 >seq926 Length=370264 Score = 125 bits (138), Expect = 1e-26 Identities = 178/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAAT 135 |||| || ||||| ||||| |||||||||||||||| | ||| | | || |||| | Sbjct 320700 CTTTCAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTCTTGCTTGGATT 320759 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAAT 194 | | ||||| || | |||||||||||||||||||| | ||| ||| |||||| || | Sbjct 320760 AGTGAAATAGAACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTGAG 320817 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 ||||| || ||| || | |||| ||| |||| |||||||||||||| | Sbjct 320818 AGGGACAGACGGAGGCATTTGTATGGTGGTGTTAGAGTTGAAATTCTTGGATCGCCACCA 320877 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 ||| |||||| | |||||| || |||| |||||||| || | | || ||||||| | Sbjct 320878 GACAAACTACAGAGAAAGCATTTGTCAAGAATGTTTTCTTTGA-CCTCGAGCGAAAGTCA 320936 Query 315 GGGG 318 |||| Sbjct 320937 GGGG 320940 >seq45 Length=485841 Score = 123 bits (136), Expect = 5e-26 Identities = 165/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACAT 124 ||| || |||||||||| ||||| | ||| |||||||||||| | ||| ||| | Sbjct 388987 CAGCACGTTTACTTTGAGCAAATTTGGGTGCTCAAAGCAGGCCATCGTGCCTGAAAATTC 388928 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | |||||||||||| |||||| || | |||||| ||||| |||||||| | ||| | Sbjct 388927 TTGCATGGAATAATGGAATAGAACTT-CGGTTCCATTTT-TTGGTTTCCGGATCCGAAGC 388870 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 | |||||| ||||| || |||||| | |||| ||| |||||||||| || ||| Sbjct 388869 AGCGATTAAGAGGGACAGGCGGGGGCATTTGTATGGTGGTGTTAGAGGTGAAACTCATGG 388810 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTT 290 | | |||| || ||| |||||||| || ||||||||||| Sbjct 388809 ACCGCTGCCAGACAAAATACAGCGAAAGCTTTTGTCAAGGATGTTT 388764 >seq1907 Length=293579 Score = 100 bits (110), Expect = 5e-19 Identities = 177/254 (70%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCG-AATACAT- 124 ||| || || |||||||| | ||| ||||| ||||| |||| ||||| | || || | Sbjct 291633 CAGCACGTTCACTTTGAACAGATTTGAGTGCTCAAACCAGGTCTTTGTGCCTAAAACTTC 291692 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | |||||||||| |||| | ||||||||||| ||| |||| | | ||| || Sbjct 291693 TTGCATGGAATA--------GGACTT-CGGTTCTATTTCGTTAGTTTTTGGATCCGAAGT 291743 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 |||| | | ||| | || ||||| | |||| ||| |||| |||||||||||| Sbjct 291744 AATGGTCAGGAGGAACAGACGGGGACATTTGTATGGTGGTGTTAGAGATGAAATTCTTGG 291803 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || |||| ||| || |||||| | || |||||||||||| ||| ||| ||| Sbjct 291804 ATCGCCACCAGACAAACAACAGCGAAAACATTTGGCAAGGATGTTTTTATTGATC-TTGA 291862 Query 305 ACGAAAGTTAGGGG 318 | ||||| || || Sbjct 291863 GCAAAAGTCAGAGG 291876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915015513984