Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4743 163 1e-37 seq8126 156 2e-35 seq4407 136 2e-29 seq5556 122 4e-25 seq2499 122 4e-25 seq1586 118 4e-24 seq2238 109 2e-21 seq926 105 3e-20 seq1326 104 1e-19 seq392 98.7 4e-18 seq8355 96.9 1e-17 seq8892 95.1 5e-17 seq5638 95.1 5e-17 seq2213 87.8 7e-15 seq3808 86.0 3e-14 seq6844 82.4 3e-13 seq4514 77.0 1e-11 >seq4743 Length=86116 Score = 163 bits (180), Expect = 1e-37 Identities = 117/135 (87%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| |||||||||||||||||||||||| || ||| ||||| Sbjct 70655 GAGCATGAGCGTACATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGCAGGTTGAAG 70714 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| Sbjct 70715 CCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAAACG 70774 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 70775 TGAGTATAGGGGCGA 70789 >seq8126 Length=20977 Score = 156 bits (172), Expect = 2e-35 Identities = 113/131 (86%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| |||||||||||||||||||||||| || ||| ||||| Sbjct 1882 GAGCATGAGCGTACATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGCAGGTTGAAG 1941 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| Sbjct 1942 CCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAAACG 2001 Query 669 TGGGTATAGGG 679 || |||||||| Sbjct 2002 TGAGTATAGGG 2012 >seq4407 Length=57087 Score = 136 bits (150), Expect = 2e-29 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| | |||||||||||||||||||||||| || ||| | ||| Sbjct 3405 GAGCATGAGCGTACATGTCGAGACCCGAAAGATGGTGAACTATGCTTGCGCAGGTTAAAG 3346 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||| ||||||||| |||| || ||||| |||||||||||||||||||| Sbjct 3345 CCAGAGGAAACTGTGGTGGAGGACCGCATCGATTCTGACGTGCAAATCGATCGTCAAACG 3286 Query 669 TGGGTATAGGGGCGA 683 | |||| ||||||| Sbjct 3285 TAAGTATGGGGGCGA 3271 >seq5556 Length=145760 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||| ||||||||| ||||||||| | || || ||| |||||||||||||||||||| Sbjct 129758 TGTTGAGACCCGAAAAATGGTGAACAAAGCTTGCCCAGGTTGAAGCCAGAGGAAACTCTG 129699 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| ||| ||| || || ||||| |||||||||||||| || ||| |||| ||| Sbjct 129698 GTGGAGGACCGCGGCGATTTTGACGTGCGAATCGATCGTCAAACGTGAGTACAGGGACGA 129639 >seq2499 Length=119867 Score = 122 bits (134), Expect = 4e-25 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| ||||||||||| || || ||||||||| ||| | ||| Sbjct 26019 GAGCATGAGCGTACATGTTGAGACCCGAAAGACGGCGACCTATGCCTGCGCAGGTTTAAG 25960 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||| |||| |||| |||| ||| ||| | |||||||||||| |||||||||||| Sbjct 25959 CCAGAGTAAACCGTGGTTGAGGACCGCGGCGATCCTGGCGTGCAAACTGATCGTCAAATT 25900 Query 669 TGGGTATAGGGGCGA 683 || |||| ||||||| Sbjct 25899 TGAGTATTGGGGCGA 25885 >seq1586 Length=257533 Score = 118 bits (130), Expect = 4e-24 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| ||||||||||| |||||||||||| || | || ||||| Sbjct 216093 GAGCATGAGCGTACTTGTTGAGACCCGAAAGAGGGTGAACTATGCTTGCACAGATTGAAG 216152 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||| ||||||||||| ||||| ||||| | ||||| ||| ||||||| || ||||| Sbjct 216153 CCAACGGAAACTCTGGCGGAGGACCGCAGTGATTCTGACGTACAAATCGGTCATCAAACG 216212 Query 669 TGGGTATAGGGGCGA 683 || |||||||||| Sbjct 216213 TGAAAATAGGGGCGA 216227 >seq2238 Length=313528 Score = 109 bits (120), Expect = 2e-21 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| ||||||||||||| |||||||||| || | | ||| | Sbjct 214280 GAGCATGAGCGTACATGTTGAGACCCGAAAGATGATGAACTATGCTTGCGCATGTTGAGG 214221 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 || | |||| || | ||||| ||||||| ||||| || ||||||||||||||||| Sbjct 214220 ACAAAAAAAACCCTAGCGGAGGACCGCAGCGATTCTGACGCGCAAATCGATCGTCAAACG 214161 Query 669 TGGGTATAGGGGCGA 683 || ||||||||| || Sbjct 214160 TGAGTATAGGGGTGA 214146 >seq926 Length=370264 Score = 105 bits (116), Expect = 3e-20 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || || ||||||| ||||||||||||||| || ||| |||| Sbjct 333044 GAGCATGAGCGTACATGCTGAAACCCGAAGGATGGTGAACTATGCTTGCGCAGGCCGAAG 332985 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| |||| | ||||| ||| ||| ||||||| |||| Sbjct 332984 CCAGAGGAAACTCTGGTGGAGGACCGCAAGGATTCTGACGTACAAGTCGATCGCCAAAGG 332925 Query 669 TGGGTA 674 || ||| Sbjct 332924 TGAGTA 332919 >seq1326 Length=435232 Score = 104 bits (114), Expect = 1e-19 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 |||| | ||||| |||| || ||||| || ||| |||||||| ||| |||| || | Sbjct 35971 TGGAGTGGAGTATGAGCGTACGTGTTGAGAGCCGGAAGATGGTAAACAATGCTTGCCCAA 36030 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 | ||||| ||||| ||| ||||||| || ||||||| ||||| ||||||||||| | Sbjct 36031 GTTGAAGTCAGAGAAAATCCTGGTGGGGGACCGCAGCGATTCTGAACTGCAAATCGATGG 36090 Query 662 TCAAATTTGGGTATAGGGGCGA 683 ||| | || |||||||| ||| Sbjct 36091 TCATACGTGAGTATAGGGTCGA 36112 >seq392 Length=1018963 Score = 98.7 bits (108), Expect = 4e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 || || ||||||||||| || ||| ||||||||||| ||||||||||| || ||| Sbjct 720933 AATGACGGTGAACTATGTTTGCTCAGGTTGAAGCCAGAGAAAACTCTGGTGAAGAACCGC 720874 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||| ||||| |||||||||||| ||||||| || || ||||| Sbjct 720873 AGCGATTCTGAAGTGCAAATCGATTGTCAAATGTGAGTCTAGGG 720830 >seq8355 Length=33020 Score = 96.9 bits (106), Expect = 1e-17 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || || |||||| ||||||||||||||||| | || ||||| Sbjct 2494 GAGCATGAGCGTACATGCTGAGACCCGGAAGATGGTGAACTATGCTTTTGCGGGTTGAAG 2553 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||| || ||||| |||||||| | ||||| ||||| |||| || |||||||||||| Sbjct 2554 CCAAAGAAAACT--GGTGGAGGACCTCAGCGATTCTGACGTGAAAGTCGATCGTCAAACG 2611 Query 669 TGGGTATAGGGGCGA 683 || ||| || |||| Sbjct 2612 TGAGTACAGCAGCGA 2626 Score = 91.5 bits (100), Expect = 6e-16 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || || |||||||||||||||||||||||| | | | ||||| Sbjct 17474 GAGCATGAGCGTACATGCTGAGACCCGAAAGATGGTGAACTATGCTTTTGTGAGTTGAAG 17415 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||| || ||| |||||||| | | ||||| || || |||| || |||||||||||| Sbjct 17414 CCAAAGAAAA--CTGGTGGATGACCTCAGCGATTATGACGTGAAAGTCGATCGTCAAACG 17357 Query 669 TGGGTATAG 677 || ||| || Sbjct 17356 TGAGTACAG 17348 Score = 80.6 bits (88), Expect = 1e-12 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || ||| |||||| | | || | ||| ||| Sbjct 801 GAGTCAGGTTGGTTGGGAATGCAGCCCAAAGCGGGCGGTAAACTCCATCCAGGGCTTAAT 860 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||| ||||||||| ||| |||| |||| ||||| ||||| | |||| | | Sbjct 861 GCTAGCACGAGTCCGATAGCGAACAGGTAGCGTGAGGGAAAGTTGAAAGGTACTTCG--A 918 Query 160 AGAGAG 165 |||||| Sbjct 919 AGAGAG 924 >seq8892 Length=38569 Score = 95.1 bits (104), Expect = 5e-17 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || || ||||||||||||||||| |||||| || | ||||| Sbjct 33502 GAGCATGAGCGTACATGATGAGACCCGAAAGATGGTGA-CTATGCTTGCGCATATTGAAG 33560 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCA 652 |||||||||| ||||||||||| |||||||| || || |||||| Sbjct 33561 CCAGAGGAAATTCTGGTGGAGGATCGCAGCGATTTTGACGTGCA 33604 >seq5638 Length=39371 Score = 95.1 bits (104), Expect = 5e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||||| ||| |||||| ||||||||| ||||||| ||||| |||||||| |||||||| Sbjct 13640 TGAAGCTAGATGAAACTGTGGTGGAGGACCGCAGCGATTCTGACGTGCAAACCGATCGTC 13581 Query 664 AAATTTGGGTATAGGGGCGA 683 ||| || |||||||||||| Sbjct 13580 AAACGTGAGTATAGGGGCGA 13561 >seq2213 Length=186844 Score = 87.8 bits (96), Expect = 7e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 ||||| ||||||| | |||| || | | | ||||||||||||||||||| |||||| Sbjct 33098 CGAAAAATGGTGAGCAATGCTTGCACAAGTTGAAGCCAGAGGAAACTCTTTTGGAGGACA 33157 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 ||| || ||||||| |||| ||||||||| ||| Sbjct 33158 GCAACGATTCTGGCATGCAGATCGATCGTTAAA 33190 >seq3808 Length=175727 Score = 86.0 bits (94), Expect = 3e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||| | Sbjct 121779 AGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCACACGTGCAAATCATT 121838 Query 660 CGTCAAATTTGGGTATAGGG 679 |||||| | || | |||||| Sbjct 121839 CGTCAAGTATGAGCATAGGG 121858 >seq6844 Length=104492 Score = 82.4 bits (90), Expect = 3e-13 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||| | ||||||| | | || || |||||| | | || || ||||||| Sbjct 44914 GAGTCGAGTTGTTAGTGAATGCAACCCAAAGCAGGTGGTAAACTCCATCCAAGGCTAAAT 44973 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||| |||| ||| ||||||| | || ||||| ||||||| |||||| | Sbjct 44974 ACCAGCACGAGTCCGAAAGCAAACAAGTACCGGGACGGAAAGTTGAAAAGTACTTTGAAG 45033 Query 160 AGAGAGTTAA 169 |||||| || Sbjct 45034 TGAGAGTAAA 45043 Score = 80.6 bits (88), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||| | |||||| | | || || |||||| | | | || ||||||| Sbjct 26251 GAGTCGAGTTGTTAGTTAATGCAACCCAAAGCAGGTGGTAAACTCCATTAAAGGCTAAAT 26192 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||| |||| ||| ||||||| | || ||||| ||||||| |||||| | Sbjct 26191 ACCAGCACGAGTCCGAAAGCAAACAAGTACCGGGACGGAAAGTTGAAAAGTACTTTGAAG 26132 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGA-AAGGGAA 196 ||||| |||| ||| ||| ||| ||| | ||| ||| Sbjct 26131 GGAGAG-TAAATAGCGCGTTAAACCGTTTAGAAGTGAA 26095 >seq4514 Length=55800 Score = 77.0 bits (84), Expect = 1e-11 Identities = 91/121 (75%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 || || ||||| ||||| ||| |||||||| || |||| |||||||||| ||||| | Sbjct 26601 TGCTGAGACCCAAAAGACGGTTAACTATGCTTGCGTAGGTTGAAGCCAGAAGAAACACCT 26542 Query 624 GTG-GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| || | |||||| || | || ||||||||||| | ||| || ||| | ||||| Sbjct 26541 GTGAGAAAC-CGCAGCCAATCGGACGCGCAAATCGATCATTAAACGTGAGTAAATGGGCG 26483 Query 683 A 683 | Sbjct 26482 A 26482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079567610900