Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq19712 331 2e-88 >seq19712 Length=3212 Score = 331 bits (366), Expect = 2e-88 Identities = 322/409 (79%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| |||||||||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 2131 TACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 2190 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||| ||||||||||||| ||||| |||||| | | |||| |||| || Sbjct 2191 TAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGGGGT 2250 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAG 181 ||||||| | ||| ||| ||| ||| |||| |||| | || || |||| | || Sbjct 2251 GAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTG-AGGATCTTGAGTTCGGGAG 2309 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| | |||||| | | |||||| ||||||| ||||||||| | | |||||||| || Sbjct 2310 AGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAGTG 2369 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| || | |||| | ||||||||| | |||||||||||||||||||||||| Sbjct 2370 GCGAAGGCGGCTCACTGGCCCGATACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACA 2429 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTA 360 ||||||||||||||||||||||||||| |||||||| | || ||||| | |||| Sbjct 2430 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTGGAAAGTTTA 2489 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| | || || ||||||||| | ||| ||||||||||| ||| Sbjct 2490 CTT-TTCAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTAC 2537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289340042432