Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq13763 105 3e-21 seq4407 105 3e-21 seq4037 105 3e-21 seq8126 100 1e-19 seq5556 100 1e-19 seq10081 95.1 6e-18 seq3142 95.1 6e-18 seq8815 87.8 8e-16 seq6948 86.0 3e-15 seq6844 86.0 3e-15 seq4514 84.2 1e-14 seq8892 82.4 4e-14 seq6275 82.4 4e-14 seq9598 77.0 1e-12 seq8355 75.2 5e-12 >seq13763 Length=7228 Score = 105 bits (116), Expect = 3e-21 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 2997 GGAAAAGAAACTAACCAGGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAGCA 2938 Query 61 CCGAATCC 68 ||||| || Sbjct 2937 CCGAAGCC 2930 >seq4407 Length=57087 Score = 105 bits (116), Expect = 3e-21 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 4570 GGAAAAGAAACTAACCAGGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAGCA 4511 Query 61 CCGAATCC 68 ||||| || Sbjct 4510 CCGAAGCC 4503 >seq4037 Length=148107 Score = 105 bits (116), Expect = 3e-21 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 80409 GGAAAAGAAACTAACCAGGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAGCA 80468 Query 61 CCGAATCC 68 ||||| || Sbjct 80469 CCGAAGCC 80476 >seq8126 Length=20977 Score = 100 bits (110), Expect = 1e-19 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| Sbjct 746 GGAAAAGAAACTAACCAGGATTCCCTTAATAACGGCGAGTGAACAGGGAAAAGCCCAGCA 805 Query 61 CCGAATCC 68 ||||| || Sbjct 806 CCGAAGCC 813 >seq5556 Length=145760 Score = 100 bits (110), Expect = 1e-19 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 130912 GGAGAAGAAACTAACCAGGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCAGCA 130853 Query 61 CCGAATCC 68 ||||| || Sbjct 130852 CCGAAGCC 130845 >seq10081 Length=30373 Score = 95.1 bits (104), Expect = 6e-18 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 19280 GGAAATGAAACTAACCAGGATTCCCTATGTAACGGCGAGTGAACAGGGAAGAGCTCAGCA 19221 Query 61 CCGAA 65 ||||| Sbjct 19220 CCGAA 19216 Score = 95.1 bits (104), Expect = 6e-18 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 19741 GGAAATGAAACTAACCAGGATTCCCTATGTAACGGCGAGTGAACAGGGAAGAGCTCAGCA 19682 Query 61 CCGAA 65 ||||| Sbjct 19681 CCGAA 19677 >seq3142 Length=113787 Score = 95.1 bits (104), Expect = 6e-18 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 43468 GGAAATGAAACTAACCAGGATTCCCTATGTAACGGCGAGTGAACAGGGAAGAGCTCAGCA 43527 Query 61 CCGAA 65 ||||| Sbjct 43528 CCGAA 43532 Score = 95.1 bits (104), Expect = 6e-18 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 44182 GGAAATGAAACTAACCAGGATTCCCTATGTAACGGCGAGTGAACAGGGAAGAGCTCAGCA 44241 Query 61 CCGAA 65 ||||| Sbjct 44242 CCGAA 44246 >seq8815 Length=23705 Score = 87.8 bits (96), Expect = 8e-16 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||| |||||||||||||| || ||||| ||||||||||||| |||||||| Sbjct 23230 GGAAAAGAAACCAACCAGGATTCCCTTGGTTACGGCCAGTGAACAGGGAAAAGCCCAGCA 23289 Query 61 CCGAATCC 68 ||||| || Sbjct 23290 CCGAAGCC 23297 >seq6948 Length=43235 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||| Sbjct 857 GGAAATGAAACTAACCAGGAGTCCCTATGTAACGGCGAGTGAACAGGGAAGAACTCAGCA 916 Query 61 CCGAA 65 ||||| Sbjct 917 CCGAA 921 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||| Sbjct 1468 GGAAATGAAACTAACCAGGAGTCCCTATGTAACGGCGAGTGAACAGGGAAGAACTCAGCA 1527 Query 61 CCGAA 65 ||||| Sbjct 1528 CCGAA 1532 >seq6844 Length=104492 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||||||||| |||||| ||||||||||||||||| | |||| Sbjct 26487 GGAAATGAAACTAACCAGGATTCCCTATGTAACGACGAGTGAACAGGGAAGAACTCAGCA 26428 Query 61 CCGAA 65 ||||| Sbjct 26427 CCGAA 26423 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||| Sbjct 44305 GGAAATGAAACTAACCAGGAGTCCCTATGTAACGGCGAGTGAACAGGGAAGAACTCAGCA 44364 Query 61 CCGAA 65 ||||| Sbjct 44365 CCGAA 44369 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||| Sbjct 44678 GGAAATGAAACTAACCAGGAGTCCCTATGTAACGGCGAGTGAACAGGGAAGAACTCAGCA 44737 Query 61 CCGAA 65 ||||| Sbjct 44738 CCGAA 44742 >seq4514 Length=55800 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||| |||| ||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct 28552 GGAAAAGAAGCTAATCAGGATTCCCTTAGTAACGGCGAGTGAACGGGGAAAAGCCCAGC 28494 >seq8892 Length=38569 Score = 82.4 bits (90), Expect = 4e-14 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||| Sbjct 31694 GAAAAGAAACTAACCAGGATTCCCTGAGTAACGGCGAGTGAACAGCAAAAAGCTCAGC 31751 >seq6275 Length=33727 Score = 82.4 bits (90), Expect = 4e-14 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| ||||| |||||||| ||||||||| ||||| ||||||||||||| |||||||| Sbjct 16811 GGAAAGGAAACGAACCAGGAGTCCCTCAGTGACGGCCAGTGAACAGGGAAAAGCCCAGCA 16870 Query 61 CCGAATCC 68 | ||| || Sbjct 16871 CGGAAGCC 16878 >seq9598 Length=40479 Score = 77.0 bits (84), Expect = 1e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| || ||||||| ||||||||| ||||||||||||||||||| | |||| |||| Sbjct 21587 GGAAATGATACTAACCGGGATTCCCTATGTAACGGCGAGTGAACAGGTAGGAGCTCAGCA 21528 Query 61 CCGAA 65 ||||| Sbjct 21527 CCGAA 21523 >seq8355 Length=33020 Score = 75.2 bits (82), Expect = 5e-12 Identities = 58/68 (85%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||| | || ||| ||||||||||| |||||| ||||||||||| |||| |||||||| Sbjct 18611 GGAAGATAACTTAATCAGGATTCCCTTAGTAACAGCGAGTGAACA-GGAATAGCCCAGCA 18553 Query 61 CCGAATCC 68 |||||||| Sbjct 18552 CCGAATCC 18545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230356458720