Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4286 176 7e-42 seq3584 168 1e-39 seq2630 167 4e-39 seq7617 165 1e-38 seq1907 145 1e-32 seq4514 140 5e-31 seq4407 140 5e-31 seq926 120 5e-25 seq1326 111 3e-22 seq1252 107 3e-21 seq991 78.8 1e-12 >seq4286 Length=141198 Score = 176 bits (194), Expect = 7e-42 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 72281 CTATTTAGCAGGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 72340 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 72341 ACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTATCAATCTGTC 72397 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | |||||||||||||||||||| Sbjct 72074 ACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 72133 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||||||| ||| || ||| | ||| | || | |||||||||||||| Sbjct 72134 CCTGTTATTG-CTC-AATTTCGTGCGACTGAATACCGCTTGTCCCTCTAAGAAG 72185 >seq3584 Length=85547 Score = 168 bits (186), Expect = 1e-39 Identities = 105/113 (93%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| Sbjct 19715 CTATTTAGCAGGTCACAGTCTCGTTCGTTATCGGAATTAACCAGACAAATGGGTCCACCA 19774 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 19775 ACTAAGAACGGCCATGCACCACCAACCACAGAATCAAGAAAGAGCTATCAATC 19827 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||| | | |||||||| |||||||||||||||||||| Sbjct 19508 ACTCGCTGAAACCGTCATTGTAGCTCACATGCGGCCCCAGACATCTAAGGGCATCACAGA 19567 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || ||||||| ||| || ||| | ||| | || | ||||||||||||| Sbjct 19568 CCGGTTATTG-CTC-AATTTCGTGCGACTGAATACCGCTTATCCCTCTAAGAAG 19619 >seq2630 Length=95923 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||| Sbjct 93771 CTATTTAGCAGGCCATAGTCTCGTTCGTTATCGGAACTAACCAGACAAATCGCTCCACCA 93712 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| Sbjct 93711 ACTAAGAACGGCCGTGCACCACCAACCAGCGAATCAAGAAAGAGCTATCAATCTGTC 93655 Score = 84.2 bits (92), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||| |||||||| |||||||||| | ||||| |||| ||||||||||||| ||||| Sbjct 93967 CCGTCATTGTAGCGCACGTGCGGCCCCGGACATCCAAGGCCATCACAGACCTGCTATTG- 93909 Query 73 CTCAAACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| || ||| | ||| | || | || ||||||||||| Sbjct 93908 CTCAA--TTTCATGCGACTGAATACCGCTCGTACCTCTAAGAAG 93867 >seq7617 Length=25701 Score = 165 bits (182), Expect = 1e-38 Identities = 100/106 (94%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 362 GTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG 421 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 422 CCATGCACCACCAACCACCGAATCAAGAAAGAGCTATCAATCTGTC 467 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | |||||||||||||||||||| Sbjct 144 ACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 203 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||||||| ||| || ||| | ||| | || | |||||||||||||| Sbjct 204 CCTGTTATTG-CTC-AATTTCGTGCGACTGAATACCGCTTGTCCCTCTAAGAAG 255 >seq1907 Length=293579 Score = 145 bits (160), Expect = 1e-32 Identities = 103/117 (88%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| | |||||| ||||||||||||||| | ||||||| | ||||| || Sbjct 292238 CTATTTAGCAGGCCAGGGTCTCACTCGTTATCGGAATTAGC-AGACAAACCGCTCCATCA 292180 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| Sbjct 292179 ACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTATCAACCTGTC 292123 Score = 84.2 bits (92), Expect = 3e-14 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||| |||||||| ||||||| || | |||||||||||||||| ||||||||||||| || Sbjct 292432 GTCATTGTAGCGCACGTGCGGTCCCGGACATCTAAGGGCATCAGAGACCTGTTATTG-CT 292374 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 | || || | ||| | ||| | ||||||||||||| Sbjct 292373 C-AATTTTGTGCGACTGAATGCCGCTTGTCCCTCTAAGAA 292335 >seq4514 Length=55800 Score = 140 bits (154), Expect = 5e-31 Identities = 102/117 (87%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||| || | ||||||||||||||||||||||||||||||||| |||||| | Sbjct 30075 CTATTTAGCGGGCCAGAATCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACGA 30134 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||| |||| || |||| ||||||| ||||| || |||||||||| Sbjct 30135 ACTAAGAACGGCCATGTACCATCAACCATCGAATCAA-AAAGACCTGTCAATCTGTC 30190 >seq4407 Length=57087 Score = 140 bits (154), Expect = 5e-31 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | |||||||| |||||||||||||||| |||||||| |||||| | Sbjct 9317 CTATTTAGCAGACAAGAGTCTCGTTTGTTATCGGAATTAACCGGACAAATCGCTCCACTA 9376 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||||| || ||||||| ||| ||||||||||||||||||| ||||||| Sbjct 9377 ACTAACAACGGCCGTGTACCACCAACCACTGAATCAAGAAAGAGCTATCTATCTGTC 9433 >seq926 Length=370264 Score = 120 bits (132), Expect = 5e-25 Identities = 77/83 (93%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||| Sbjct 315968 CTATTTAGCAGGCCAGAGTCTCGTTCGTTATCGGAAT-AACCAGACAAATCGCTCCACCA 316026 Query 202 ACTAAGAACGGCCATGCACCACC 224 ||||||||||||||||||||||| Sbjct 316027 ACTAAGAACGGCCATGCACCACC 316049 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | |||||||||||||||||||| Sbjct 315764 ACTCGCTGAAACCGTCACTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 315823 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | |||||||| ||| || ||| | ||| | || | ||||||| |||||| Sbjct 315824 CTTGTTATTG-CTC-AATTTCGTGCGACTGAATACCGCTTGTCCCTCCAAGAAG 315875 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | |||||||||||||||||||| Sbjct 316186 ACTCGCTGAAACCGTCACTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 316245 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | |||||||| ||| || ||| | ||| | || | ||||||| |||||| Sbjct 316246 CTTGTTATTG-CTC-AATTTCGTGCGACTGAATACCGCTTGTCCCTCCAAGAAG 316297 >seq1326 Length=435232 Score = 111 bits (122), Expect = 3e-22 Identities = 87/103 (84%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 ||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| ||||| Sbjct 33451 CTCGTTCGTTACCGGAATTGACCAGACAAATCGTTCCACTAACTAAGAACGGCCGTGCAC 33392 Query 221 CACC-AC------CCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||| || ||| |||||||||| |||||||||||||| Sbjct 33391 CACCGACCACCGACCACCGAATCAAGAAGGAGCTATCAATCTG 33349 >seq1252 Length=502764 Score = 107 bits (118), Expect = 3e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| ||||| |||||||||||||||||||||||||| | ||| |||| | | Sbjct 119860 CTATTTAACAGGTCGGAGTCTCGTTCGTTATCGGAATTAACCAAGCTAATTGCTCCCCTA 119801 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| ||||||||||||| ||| ||||||||| | |||||| ||| || Sbjct 119800 ACTAAGAACAGCCATGCACCACCGGCCAGCAAATCAAGAAGGTACTATCAGTCTCTC 119744 >seq991 Length=221747 Score = 78.8 bits (86), Expect = 1e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | ||| ||||||||||||||| Sbjct 44196 ACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACAATTAAGGGCATCACAGA 44137 Query 62 CCTGTTATTGC 72 || |||||||| Sbjct 44136 CCCGTTATTGC 44126 Score = 78.8 bits (86), Expect = 1e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | ||| ||||||||||||||| Sbjct 44788 ACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACAATTAAGGGCATCACAGA 44729 Query 62 CCTGTTATTGC 72 || |||||||| Sbjct 44728 CCCGTTATTGC 44718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796644400398