Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq13867 73.4 8e-11 seq7617 73.4 8e-11 seq5638 73.4 8e-11 seq4922 73.4 8e-11 seq734 73.4 8e-11 >seq13867 Length=13818 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 5442 GACAATGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATGGTAACGCAGGTG 5501 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| ||| || |||||||| Sbjct 5502 TCCCAAGGTGAGCTCAGCCAGGACGGAAACCTGGCGTGGAGTAAAAGGGCAAAAG 5556 >seq7617 Length=25701 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 14255 GACAATGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATGGTAACGCAGGTG 14196 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| ||| || |||||||| Sbjct 14195 TCCCAAGGTGAGCTCAGCCAGGACGGAAACCTGGCGTGGAGTAAAAGGGCAAAAG 14141 >seq5638 Length=39371 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 28913 GACAATGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATGGTAACGCAGGTG 28854 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| ||| || |||||||| Sbjct 28853 TCCCAAGGTGAGCTCAGCCAGGACGGAAACCTGGCGTGGAGTAAAAGGGCAAAAG 28799 >seq4922 Length=94101 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 1363 GACAATGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATGGTAACGCAGGTG 1422 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| ||| || |||||||| Sbjct 1423 TCCCAAGGTGAGCTCAGCCAGGACGGAAACCTGGCGTGGAGTAAAAGGGCAAAAG 1477 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 7735 GACAATGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATGGTAACGCAGGTG 7794 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| ||| || |||||||| Sbjct 7795 TCCCAAGGTGAGCTCAGCCAGGACGGAAACCTGGCGTGGAGTAAAAGGGCAAAAG 7849 >seq734 Length=446040 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 329465 GACAATGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATGGTAACGCAGGTG 329524 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| ||| || |||||||| Sbjct 329525 TCCCAAGGTGAGCTCAGCCAGGACGGAAACCTGGCGTGGAGTAAAAGGGCAAAAG 329579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982201967808