Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq19712 275 1e-71 >seq19712 Length=3212 Score = 275 bits (304), Expect = 1e-71 Identities = 265/336 (79%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 2103 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 2046 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 2045 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 1986 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 1985 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCA 1926 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| ||| |||| ||| | || ||| Sbjct 1925 CCAACTAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA------AA--------TCTT 1880 Query 241 TCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || ||||| ||| | ||| |||||||||| |||||| ||| | || || | | Sbjct 1879 TC-CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAA 1821 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | |||| | || ||||||||||||| |||||| Sbjct 1820 GGTACGTTCCCACGCGTTACTCACCCGTCTGCCGCT 1785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071783906240