Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq991 87.8 1e-15 seq4407 84.2 1e-14 seq3584 84.2 1e-14 seq926 75.2 7e-12 >seq991 Length=221747 Score = 87.8 bits (96), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 3/72 (4%) Strand=Plus/Minus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 44377 CTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT 44320 Query 113 ACAACGCAAGCT 124 || |||||||| Sbjct 44319 -CAGCGCAAGCT 44309 >seq4407 Length=57087 Score = 84.2 bits (92), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||||| | Sbjct 8928 CTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT 8985 Query 113 ACAACGCAAGCT 124 || |||||||| Sbjct 8986 -CAGCGCAAGCT 8996 >seq3584 Length=85547 Score = 84.2 bits (92), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| ||||| || ||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct 19326 CTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGACAGGGACGTAAT 19383 Query 113 ACAACGCAAGCT 124 || |||||||| Sbjct 19384 -CAGCGCAAGCT 19394 >seq926 Length=370264 Score = 75.2 bits (82), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| ||||| || ||||||||| | ||||||||| |||||||||||||| |||||||| Sbjct 315582 CTAAACCATT-CAATCGGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAAGGACGTAA- 315638 Query 113 ACAACGCAAGCT 124 || |||||||| Sbjct 315639 CCAGCGCAAGCT 315650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300743154440