Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq7617 84.2 3e-14 seq4514 84.2 3e-14 seq4407 84.2 3e-14 seq4286 84.2 3e-14 >seq7617 Length=25701 Score = 84.2 bits (92), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | | ||| ||| Sbjct 861 AAACCAACAAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAGAATTTTCAGGCA 919 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG-GTTCCTCCG-CA 125 || ||||||||||| ||||| ||||| |||| ||||| || ||| |||||| || Sbjct 920 CAAAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAACGTGCTGTCCGCCTCCGACA 979 Query 126 CACCAATGAAGGCA 139 | | | | |||||| Sbjct 980 CCCGATTAAAGGCA 993 >seq4514 Length=55800 Score = 84.2 bits (92), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | | ||| ||| Sbjct 31296 AAACCAACAAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAGAATTTTCAGGCA 31354 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG-GTTCCTCCG-CA 125 || ||||||||||| ||||| ||||| |||| ||||| || ||| |||||| || Sbjct 31355 CAAAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAACGTGCTGTCCGCCTCCGACA 31414 Query 126 CACCAATGAAGGCA 139 | | | | |||||| Sbjct 31415 CCCGATTAAAGGCA 31428 >seq4407 Length=57087 Score = 84.2 bits (92), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||| || || | | ||||||| |||||||||||| | | ||| ||| Sbjct 9817 AAACCAACAAAAT-GGAACCGAAGGCCTATTCCATTATTCCATGCAAGAATTTTCAGGCA 9875 Query 70 --TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG-GTTCCTCCG-CA 125 || ||||||||||| ||||| ||||| |||| ||||| || ||| |||||| || Sbjct 9876 CATAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAACGTGCTGTCCGCCTCCGACA 9935 Query 126 CACCAATGAAGGCA 139 | | ||| |||||| Sbjct 9936 CCCGAATAAAGGCA 9949 >seq4286 Length=141198 Score = 84.2 bits (92), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | | ||| ||| Sbjct 72791 AAACCAACAAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAGAATTTTCAGGCA 72849 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG-GTTCCTCCG-CA 125 || ||||||||||| ||||| ||||| |||| ||||| || ||| |||||| || Sbjct 72850 CAAAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAACGTGCTGTCCGCCTCCGACA 72909 Query 126 CACCAATGAAGGCA 139 | | | | |||||| Sbjct 72910 CCCGATTAAAGGCA 72923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595083768972