Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq7617 122 9e-26 seq4514 122 9e-26 seq4286 122 9e-26 seq4407 109 6e-22 seq2499 96.9 4e-18 seq3872 89.7 5e-16 seq1326 82.4 8e-14 >seq7617 Length=25701 Score = 122 bits (134), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACAT 63 ||| || ||||||||||| ||||| ||| | |||||||||||||| ||| ||| | Sbjct 966 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 907 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 | ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | Sbjct 906 TTGCATGGAATAATGGAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 849 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||| | || | ||| || |||||| | |||| ||| | |||||||||||||| Sbjct 848 TAATGGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTG 789 Query 184 GAT 186 ||| Sbjct 788 GAT 786 >seq4514 Length=55800 Score = 122 bits (134), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACAT 63 ||| || ||||||||||| ||||| ||| | |||||||||||||| ||| ||| | Sbjct 31401 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 31342 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 | ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | Sbjct 31341 TTGCATGGAATAATGGAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 31284 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||| | || | ||| || |||||| | |||| ||| | |||||||||||||| Sbjct 31283 TAATGGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTG 31224 Query 184 GAT 186 ||| Sbjct 31223 GAT 31221 Score = 82.4 bits (90), Expect = 8e-14 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACAT 63 ||| || ||||||||||| ||||| ||| | |||||||||||||| ||| ||| | Sbjct 30689 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 30630 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 | ||||||||||| ||| |||| | |||||| |||||| || || | ||| | | Sbjct 30629 TTGCATGGAATAATGAAATGGGAC-TCTGGTTCTGTTTTGTTGGGTT-TTGGATCCGAAG 30572 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 || || || |||||| | | || | |||| ||||| |||||||||||| | Sbjct 30571 TAGTGGCTAAGGGGGATAGACTGAGGGATTTGTATGGCGGTGTCAGAGGTGAAATTCTCG 30512 Query 184 GAT 186 ||| Sbjct 30511 GAT 30509 >seq4286 Length=141198 Score = 122 bits (134), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACAT 63 ||| || ||||||||||| ||||| ||| | |||||||||||||| ||| ||| | Sbjct 72896 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTGAAAATTC 72837 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 | ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | Sbjct 72836 TTGCATGGAATAATGGAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 72779 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||| | || | ||| || |||||| | |||| ||| | |||||||||||||| Sbjct 72778 TAATGGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTG 72719 Query 184 GAT 186 ||| Sbjct 72718 GAT 72716 >seq4407 Length=57087 Score = 109 bits (120), Expect = 6e-22 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACAT 63 ||| || ||||||||||| ||||| ||| | |||||||||||| | ||| ||| | Sbjct 9922 CAGCACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTATGTGCCTGAAAATTC 9863 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 | ||||||||||| ||||||| | | |||||| ||||||| ||||| | ||| | | Sbjct 9862 TTGCATGGAATAATGGAATAGG-CCTTCGGTTCCATTTTGTTGGTTT-TTGGATCCGAAG 9805 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||| | || | |||| | |||||| | |||| ||| | |||||||||||||| Sbjct 9804 TAATGGTTAAGAGGGATGGACGGGGGCATTCGTATGGCGGTGTAAGAGGTGAAATTCTTG 9745 Query 184 GAT 186 ||| Sbjct 9744 GAT 9742 >seq2499 Length=119867 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACAT--TACCATG 70 ||||||||||| | ||| ||| | |||||||||||||||| | | | || | ||||| Sbjct 17013 TTTACTTTGAACATATTTGAGTGCTCAAAGCAGGCCTTTGTGCCTAGAAATTCTTCCATG 16954 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 |||||| ||||||||| | ||||||| |||| | || |||| ||| | |||||| | Sbjct 16953 GAATAAGGGAATAGGACCT-CGGTTCTGTTTTATTGG-TTCTTGGATCTGAAGTAATGGT 16896 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | ||| || |||||| | |||| ||| | ||||||||| ||||||| Sbjct 16895 TAGGAGGGACAGGCGGGGGCATTTGTATAGCCGTGTAAGAGGTGAAATACTTGGAT 16840 >seq3872 Length=176994 Score = 89.7 bits (98), Expect = 5e-16 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG--CTCGAATACATTACC 67 || || |||||||| ||||| ||| | ||||| |||| ||||| | |||||| | | Sbjct 100729 ACGTTCACTTTGAACAAATTTGAGTGCTCAAAACAGGTCTTTGTGCCCGAATATTCTTGC 100670 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 ||||| || | |||||| || | |||||||||||||| || ||| | ||| | |||| Sbjct 100669 ATGGAGTAGTGGAATAGAACTT-CGGTTCTATTTTGTTGGCTTCCGGATCCGAAC-TAAT 100612 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 | | || | ||| || |||||| | ||| ||| |||||||||||||||||| Sbjct 100611 GGTTAAGAGGGACAGGCGGGGGCATTTTTATGGCGGTGTTGGAGGTGAAATTCTTGGATT 100552 >seq1326 Length=435232 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG---CTCGAATACATTACCAT 69 |||| | |||| ||||| || | ||||| |||||||||| || ||| || | || Sbjct 32857 TTTAATCTGAACAAATTTTAGTGCTCAAACCAGGCCTTTGTGCCTGAAATTTCTTGC-AT 32915 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || ||||| |||||||| || ||||||||||||| || || | ||| | ||||| Sbjct 32916 GGGATAATGGAATAGGAGGTT-GGTTCTATTTTGTTGG-TTATCGGATCCAGATTAATGG 32973 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | |||||| |||||| | |||| ||| | ||||||||| ||||||| Sbjct 32974 TTAAGAGGGATAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATCCTTGGAT 33030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511900016320