Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq19712 268 2e-69 >seq19712 Length=3212 Score = 268 bits (296), Expect = 2e-69 Identities = 305/411 (74%), Gaps = 30/411 (7%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 2103 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 2044 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 2043 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 1984 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | || Sbjct 1983 TGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCACC 1924 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | ||| ||||| | ||| || ||||| Sbjct 1923 AACTAGCTAATCAGACGCGGG-----CCGATCTT--TCGGCGATAA-------ATCTTTC 1878 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | |||| |||||||||| |||||| ||| | || ||| ||| Sbjct 1877 CCCGTAAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAAGGT 1818 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||||||||||| ||| || || | | || || Sbjct 1817 ACGTTCCCACGCGTTACTCACCCGTCTGCCGCT-------GACGTA---------TTGCT 1774 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1773 ACGCCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGCTCTGAG 1723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222153588608